Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 580 a.a., single-stranded-DNA-specific exonuclease RecJ from Phaeobacter inhibens DSM 17395

 Score =  249 bits (635), Expect = 3e-70
 Identities = 190/534 (35%), Positives = 278/534 (52%), Gaps = 35/534 (6%)

Query: 49  KQLHGIDRAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRF 108
           +++  ++ A      A+   +RI V  D+D DG +S+AL ++ L  +G     Y VP+R 
Sbjct: 69  RRMKDMEPAAARFLQAVERCERIAVFADYDVDGGSSAALLLVWLNQVGLSATLY-VPDRI 127

Query: 109 EDGYGLSPEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEV 168
           ++GYG +   +  A+ R  ++I+ VD G  S   +  A  KG  V+V DHHL G+ LP+ 
Sbjct: 128 DEGYGPNDAAM-AALAREHDLIVCVDCGTLSHGPI--AAAKGADVIVLDHHLGGETLPDC 184

Query: 169 DAMVNPNLQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVAL 228
            A+VNPN Q            GV F +++ L   MR +G         P LM L+DLVAL
Sbjct: 185 VAVVNPNRQDEDGDLGYFCAAGVVFLMLVELRRQMRDKGLGTG-----PDLMALLDLVAL 239

Query: 229 GTVADVVPLDDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRI 288
            TVADV PL + NR LV QGL ++ A   RPG+ AL +V++ D+        GF LGPR+
Sbjct: 240 ATVADVAPLIEANRALVRQGL-KVMATRQRPGLVALADVSRMDSAPSTY-HLGFLLGPRV 297

Query: 289 NAAGRLDDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSD 348
           NA GR+     G  LL  ++   A  +A+ LD LN  R++IE  ++  A      L+ ++
Sbjct: 298 NAGGRIGKADLGARLLATSDPAEAEAIAARLDELNTERRDIENAVRAAA------LEQAE 351

Query: 349 DRELPYGLVLFQRD-WHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMR 407
            R L   LV    + WH GV+GI+ASR+KE   RP I     GD + KGS RSV G+ + 
Sbjct: 352 ARGLDAPLVWAAGEGWHPGVVGIVASRLKEAAGRPAIVIGLDGD-EGKGSGRSVSGIDLG 410

Query: 408 DALDKIDTQNPGIILKFGGHAMAAGLTIEEQNFE-RFCRLFDQLVREELDEAALKGIILS 466
            ++ +   +  G+++K GGH MAAGLT+     E    RL + L ++   +     + L 
Sbjct: 411 ASIQRAAAE--GLLIKGGGHKMAAGLTVARDQLEPAMARLSELLAKQGAGDLGPSDLKL- 467

Query: 467 DGELKPEEFSLHTAELLRAGGPWGQAFPEPLFD-GEFKVLHQKLVGEKHLKLML-EPLYK 524
           DG L P   ++   E +   GP+G   P P +   + +V   K VGE HLKL L + L  
Sbjct: 468 DGMLMPGAATVPLIEQIEQAGPFGAGAPAPRYGFPDLQVRFAKRVGESHLKLSLSDGLSS 527

Query: 525 GFPTNVMIDGI---AFNVDL-RRWPDASVKTVRLAYKLDINEFRGNQSLQLMID 574
           G      ID I   AF+  L  R  D        A +L+IN + G QS+QL ++
Sbjct: 528 G------IDAICFGAFDTALGSRLLDHGGARFHFAGRLEINTWGGRQSVQLRLE 575