Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella loihica PV-4

 Score =  694 bits (1790), Expect = 0.0
 Identities = 343/577 (59%), Positives = 448/577 (77%), Gaps = 6/577 (1%)

Query: 3   EIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLF 62
           +I RRP+ D S LP H+ P+L+++Y SRG + V   E A   L     L  +D+A  ++ 
Sbjct: 4   KIVRRPKVDDSHLPSHLSPILKQVYASRGCT-VDDCELALANLLRPNTLKDVDKAAAIIA 62

Query: 63  AAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQA 122
            A+A+Q+ I+++GDFDADGATS+++ +LALRM+G+ NVDYL+PNRF+ GYGLSPE+V  A
Sbjct: 63  DAMAKQQSILIIGDFDADGATSTSVCLLALRMMGAINVDYLIPNRFDYGYGLSPEIVQVA 122

Query: 123 IERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFP 182
            ++GAE+++TVDNG+SS+EGV  AK  G+QVV+TDHHLPG  +PE DA+VNPN   C F 
Sbjct: 123 QQKGAELLITVDNGISSIEGVAAAKALGMQVVITDHHLPGNSVPEADAIVNPNQLGCGFA 182

Query: 183 SKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNR 242
           SKA+AGVGVAFYLM AL   +R +GW+ AQG+ EP L  L+D+VALGTVADVV LD NNR
Sbjct: 183 SKAIAGVGVAFYLMSALRAELRSRGWYQAQGIQEPNLATLLDIVALGTVADVVSLDTNNR 242

Query: 243 ILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVE 302
           ILV  GL+R+RAG  RPGI AL+EVAKR+  R+VA+DFGFA+GPR+NAAGRLD+M+ GVE
Sbjct: 243 ILVDAGLKRVRAGRCRPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALGVE 302

Query: 303 LLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRD 362
            LLC+++  ARRMASELDGLN  R+E+E GM+QEA+   E L L ++ ELP+G+ L+Q+D
Sbjct: 303 TLLCDDMMRARRMASELDGLNAERRELETGMQQEALKSLESLSL-NEAELPWGIALYQQD 361

Query: 363 WHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIIL 422
           WHQGVIGILASRIK+KYHRPVIAFAE G+G++KGS RS+ GLHMRD L+ I+ ++PG+I+
Sbjct: 362 WHQGVIGILASRIKDKYHRPVIAFAEAGEGEIKGSARSIKGLHMRDLLELINARHPGMII 421

Query: 423 KFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAEL 482
           KFGGHAMAAGL++    FERF + +D+ VRE L    L G I+SDGEL P + ++  A  
Sbjct: 422 KFGGHAMAAGLSLRAGEFERFAKAYDEAVRELLAPEQLTGEIVSDGELSPAQLNMALARE 481

Query: 483 LRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLR 542
           LR+ GPWGQ FPEP+FDG F++L Q++VGE+HLKL+LE          M+D IAFNVDL 
Sbjct: 482 LRSAGPWGQNFPEPIFDGVFRILQQRIVGERHLKLVLE----SECGQTMVDAIAFNVDLT 537

Query: 543 RWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK 579
            WPDA+++   +AYKLDINEFRGN+SLQLM++ +E K
Sbjct: 538 TWPDATIQYAEVAYKLDINEFRGNESLQLMVEQIEPK 574