Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 565 a.a., single-stranded-DNA-specific exonuclease RecJ from Dechlorosoma suillum PS

 Score =  528 bits (1360), Expect = e-154
 Identities = 286/568 (50%), Positives = 381/568 (67%), Gaps = 17/568 (2%)

Query: 8   PEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLFAAIAE 67
           P P   L  + + PLL R+Y +RG+ + A+L+   K+L    QL G + A  LL  AI  
Sbjct: 11  PRPQWQLEQEGLHPLLARIYAARGIKHKAELDYDLKSLIPPSQLTGTEEAAILLADAIEA 70

Query: 68  QKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGA 127
           + RI+VVGD+D DGAT++A++V ALR+LG   VDYLVP+RF  GYGLSP++V+ A ER  
Sbjct: 71  EARILVVGDYDCDGATATAVAVRALRLLGG-TVDYLVPDRFVHGYGLSPQIVELAAERQP 129

Query: 128 EMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALA 187
           ++++TVDNG++S+EGV  A+Q G+  ++TDHHLP + LPE D +VNPN   C FPSKALA
Sbjct: 130 DLLVTVDNGIASIEGVEAARQLGIATLITDHHLPAETLPEADCIVNPNQPGCTFPSKALA 189

Query: 188 GVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQ 247
           GVGV FY+ +AL   MR++G F  +   EP    L+DLVALGTVADVV LD NNRILV Q
Sbjct: 190 GVGVMFYVALALRAEMRRRGAFGPE-RPEPNFSCLLDLVALGTVADVVKLDHNNRILVAQ 248

Query: 248 GLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCN 307
           GL+R+R G   PGI+AL   A R+ +   A D GF +GPR+NAAGRL DMS G+E L+ +
Sbjct: 249 GLKRMREGKLTPGIRALFRAAGRNLQTASAFDLGFTVGPRLNAAGRLSDMSLGIECLITD 308

Query: 308 NIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGV 367
           +   A  +A +LD LN+ R+EIE GM+++A+   E   L        G+ LF  DWHQGV
Sbjct: 309 DEARAANIAQQLDQLNRERREIEAGMQEQALIHLENFDLEASGA---GVALFDPDWHQGV 365

Query: 368 IGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGH 427
           +GILASRIKEK HRPV AFA G DG++KGS RS+PGLH+RDALD +  + PGI+L+FGGH
Sbjct: 366 VGILASRIKEKLHRPVFAFARGDDGQIKGSGRSIPGLHLRDALDLVSKRAPGILLRFGGH 425

Query: 428 AMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGG 487
           AMAAG T+ E+ FE F  LF Q+  E L+ A L   + +DG L+    SL  AE+L AG 
Sbjct: 426 AMAAGATLMEERFEEFKSLFAQVADELLNPADLTRTLETDGALEAGYISLQVAEML-AGE 484

Query: 488 PWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDA 547
            WGQ FP PLF+  F+V  Q+++ +KHLKL L+          +++ I FN      P A
Sbjct: 485 VWGQGFPAPLFEDVFEVESQRVLKDKHLKLRLK------KERSVLEAIQFNATENPGPRA 538

Query: 548 SVKTVRLAYKLDINEFRGNQSLQLMIDH 575
                RLAY+L IN++ G Q+ QL+++H
Sbjct: 539 -----RLAYRLTINDYNGVQTPQLVVEH 561