Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., bacterial RecJ exonuclease from Marinobacter adhaerens HP15

 Score =  576 bits (1484), Expect = e-168
 Identities = 311/581 (53%), Positives = 408/581 (70%), Gaps = 17/581 (2%)

Query: 3   EIQRRPEPDLSLLPD---HIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVE 59
           +I RRP+PD    PD   ++ PLLRRLY +RGV++  QL    K L S   L GIDRAVE
Sbjct: 5   KILRRPQPDT--FPDWGQNLPPLLRRLYAARGVTSDEQLSYTLKHLASPLSLRGIDRAVE 62

Query: 60  LLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVV 119
           LL  AI +Q+R++V+GDFDADGATS+A+++L L MLG +++D+ VP+RF DGYGL+P ++
Sbjct: 63  LLAEAIDQQQRVLVLGDFDADGATSTAVAMLGLSMLGLQSIDFRVPSRFADGYGLTPGII 122

Query: 120 DQAIERGA--EMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQ 177
           ++  + G   ++++TVDNG+S++EGVR AK+ G++V+VTDHHL G+ELP+ DA+VNPN  
Sbjct: 123 ERLRDEGQLPDLMVTVDNGISAVEGVRAAKELGVKVMVTDHHLAGEELPDADAIVNPNQP 182

Query: 178 QCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPL 237
            C F SK  AGVGV FY++ AL   +R+          EP L  L+DLVALGTVADVVPL
Sbjct: 183 GCPFLSKNAAGVGVMFYVLTALRKQLRETNRLPDP---EPNLGCLLDLVALGTVADVVPL 239

Query: 238 DDNNRILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDM 297
           D NNRI V QGL+RIR G ARPGI AL+EVA RD   + + D GF +GPR+NAAGRLDDM
Sbjct: 240 DHNNRIFVEQGLRRIRQGEARPGILALLEVAGRDHTAISSTDLGFVVGPRLNAAGRLDDM 299

Query: 298 SFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLV 357
           S G+  LL ++   ARR+A ELD  N+ R+ IE+ MK +A      + L  D  LP+GL 
Sbjct: 300 SIGIACLLADSPDEARRLARELDTFNRERRTIEKDMKAQAQDLLSSMSLDLDG-LPWGLA 358

Query: 358 LFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDG-KLKGSCRSVPGLHMRDALDKIDTQ 416
           LF  DWHQGVIGILA+RI+E+ HRP IAFA   +G  +KGS RS+PGLH+RD L  +D++
Sbjct: 359 LFDTDWHQGVIGILAARIREQTHRPTIAFAPDENGVDIKGSARSIPGLHIRDVLAVVDSR 418

Query: 417 NPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFS 476
           +PGI+ KFGGHAMAAG+T+   + + F   FD+ VR+ L    L+  I +DG L   E S
Sbjct: 419 HPGIMKKFGGHAMAAGMTLARDDLDAFSEAFDRAVRDTLSAEDLEAAITTDGPLGASELS 478

Query: 477 LHTAELLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIA 536
           L TA LL+  GPWGQ FPEPLFDGEF+V+ Q++VGE HLKL+L+P+  G     +IDGIA
Sbjct: 479 LDTAALLKRAGPWGQHFPEPLFDGEFRVVSQRIVGENHLKLVLQPVEGG----GIIDGIA 534

Query: 537 FNVDLRRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 577
           FN      PD +    R+ YK D N FRG  +LQL++D+LE
Sbjct: 535 FNTG-PEVPDYTRTGARVVYKPDANTFRGRTNLQLLVDYLE 574