Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  669 bits (1725), Expect = 0.0
 Identities = 333/575 (57%), Positives = 438/575 (76%), Gaps = 6/575 (1%)

Query: 3   EIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLF 62
           +I RRP  D S LP H+ PLLR+LY  RGV   ++ E   K L     + G+D A +L+ 
Sbjct: 4   KIIRRPTVDDSHLPTHLPPLLRQLYARRGVLP-SECELVLKGLLRPDTMKGLDLAAKLIA 62

Query: 63  AAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQA 122
            A+   K I++VGDFDADGATS+++ +LALRM+G+  VDYL+PNRF+ GYGLSPE+V  A
Sbjct: 63  DAMQLDKSILIVGDFDADGATSTSVCILALRMMGASKVDYLIPNRFDYGYGLSPEIVAVA 122

Query: 123 IERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFP 182
             + A++++TVDNG+SS+EGV  AK  G+QVV+TDHHLPG ELP+ DA+VNPN   C F 
Sbjct: 123 ASKQAQLLITVDNGISSIEGVAAAKAFGMQVVITDHHLPGHELPKADAIVNPNQPGCQFA 182

Query: 183 SKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNR 242
           SK++AGVGVAFYLM AL   +R + W+ A+G+ EP L  L+D+VALGTVADVV LD NNR
Sbjct: 183 SKSIAGVGVAFYLMTALRAELRARNWYQARGIAEPNLGTLLDIVALGTVADVVSLDTNNR 242

Query: 243 ILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVE 302
           ILV  GLQR+R+G  R GI AL+EVAKR+  R+VA+DFGFA+GPR+NAAGRLD+M+ GVE
Sbjct: 243 ILVEAGLQRVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVE 302

Query: 303 LLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRD 362
            LLC ++  ARRMA+ELD LNQ R+E+E GM+QEA+   E L+L+++ +LP+G+ LFQ D
Sbjct: 303 TLLCEDMMYARRMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEE-QLPWGIALFQED 361

Query: 363 WHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIIL 422
           WHQGVIGILASRIK+KYHRPVIAFA+ G+G++KGS RS+ GLHMRD L+ +++++PG+I 
Sbjct: 362 WHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLIS 421

Query: 423 KFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAEL 482
           KFGGHAMAAGLT++   F  F + +D  VRE+L    L G + SDGEL P E +L  A+L
Sbjct: 422 KFGGHAMAAGLTLKSGGFATFAKAYDDAVREQLKPEQLTGELWSDGELTPTELTLEIAQL 481

Query: 483 LRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLR 542
           LR  GPWGQ+F EPLFDG FK++ Q++VG++HLKL+LE         VM+D IAFNV L 
Sbjct: 482 LRNAGPWGQSFEEPLFDGYFKIIQQRIVGDRHLKLVLETQC----GTVMLDAIAFNVALH 537

Query: 543 RWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 577
            WPDA+++  R+ YKLD+NE+RGN +LQLM++ +E
Sbjct: 538 TWPDATIQHARIVYKLDVNEYRGNFTLQLMVEQIE 572