Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., ssDNA exonuclease RecJ from Klebsiella michiganensis M5al

 Score =  721 bits (1861), Expect = 0.0
 Identities = 362/575 (62%), Positives = 448/575 (77%), Gaps = 5/575 (0%)

Query: 2   IEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELL 61
           I+++RR   D   LP  + PLL+RLY SRGV +  +LE+  K +  + QL G+++AVE+L
Sbjct: 5   IQLRRREAVDGVDLPADLPPLLQRLYASRGVRSAQELERGVKGMLPWSQLTGVEKAVEIL 64

Query: 62  FAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQ 121
           + A  +   I+VVGDFDADGATS+ALSVLALR LG  NV YLVPNRFEDGYGLSPEVVDQ
Sbjct: 65  YGAFKQGLHIVVVGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPEVVDQ 124

Query: 122 AIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAF 181
           A  RGA++IMTVDNG+SS  GV +A   G+ V+VTDHHLPG  LP  +A++NPNL+ C F
Sbjct: 125 AHARGAQLIMTVDNGISSHAGVDHAHALGIPVLVTDHHLPGDSLPAAEAIINPNLRDCEF 184

Query: 182 PSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNN 241
           PSK+LAGVGVAFYLM+AL   +R +GWF  +G+  P L +L+DLVALGTVADVVPLD NN
Sbjct: 185 PSKSLAGVGVAFYLMLALRTFLRDKGWFEERGIAPPNLADLLDLVALGTVADVVPLDANN 244

Query: 242 RILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGV 301
           RIL  QGL RIRAG  RPGI+AL+E+A RD ++L A+D GFALGPR+NAAGRLDDMS GV
Sbjct: 245 RILTWQGLSRIRAGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDMSVGV 304

Query: 302 ELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQR 361
            LLLC+N   AR +A+ELD LNQTRKEIE+GM+ EA+  CE+L+ S +  LP GL ++  
Sbjct: 305 ALLLCDNTGEARVLANELDALNQTRKEIEQGMQAEALTLCEKLERSGE-TLPGGLAMYHP 363

Query: 362 DWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGII 421
            WHQGV+GILASRIKE++HRPVIAFA  GDG LKGS RS+ GLHMRDAL+++DT  PG+I
Sbjct: 364 QWHQGVVGILASRIKERFHRPVIAFAPTGDGTLKGSGRSIQGLHMRDALERLDTLYPGLI 423

Query: 422 LKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAE 481
           +KFGGHAMAAGL++EE  FE F + F +LV E LD A L+G ++SDG L   E S+  A+
Sbjct: 424 MKFGGHAMAAGLSLEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLTAAEMSMEVAQ 483

Query: 482 LLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDL 541
           +LR  GPWGQ FPEPLFDG F++L Q+LVGE+HLK+M+EP+  G     ++DGIAFNVD 
Sbjct: 484 MLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGG----PLLDGIAFNVDT 539

Query: 542 RRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHL 576
             WPD  V+ V+LAYKLDINEFRGN+SLQL+IDHL
Sbjct: 540 SLWPDNGVREVQLAYKLDINEFRGNRSLQLIIDHL 574