Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  254 bits (648), Expect = 9e-72
 Identities = 185/508 (36%), Positives = 265/508 (52%), Gaps = 39/508 (7%)

Query: 7   RPEPDLSLLPDH-------IDPLLRRLYLSRGVSNVAQLE----KAAKALHSFKQLHGID 55
           RPE + +L P         I  LL RL L RG+S+V  ++       + L   ++  G+ 
Sbjct: 7   RPEVEGALPPSASLAERLGISDLLLRLLLRRGLSSVQDMDVYLSPQLRHLAPLEEWPGLA 66

Query: 56  RAVELLFAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLS 115
            A  ++ A I       V GD+D DG TS+AL    L   G  +V + +P+R  +GYGL+
Sbjct: 67  EAAGVITAGITAGMPFAVWGDYDVDGVTSTALVHDVLEFHGV-DVRHHLPDRRAEGYGLN 125

Query: 116 PEVVDQAIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPN 175
            E +++    G  +++TVD G+S +  +  A++ G+ VVV+DHHLP + LP   A+ NP 
Sbjct: 126 VEWIERLAADGVRLLLTVDCGISDVVPISRARELGMTVVVSDHHLPPEVLPPAHAICNPR 185

Query: 176 LQQCAFPSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVV 235
           L  C  P  ALAGVGVAF++M A+   + ++            + E++DLVALGT+ADVV
Sbjct: 186 LACC--PCPALAGVGVAFFVMAAVNAALGERSGRRYD------MREVLDLVALGTLADVV 237

Query: 236 PLDDNNRILVHQGLQRIRAGLARPGIQALIEVA-KRDARRLVAADFGFALGPRINAAGRL 294
            L   NRILV  GL +I A   RPG+ AL  VA    +  L A    F L PRINAAGRL
Sbjct: 238 DLGGQNRILVKNGLLKI-AEARRPGMAALKAVAGYNPSASLGAGQVVFGLAPRINAAGRL 296

Query: 295 DDMSFGVELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPY 354
            +    ++LL       A ++A  LD +N  R+  E+ + +EA     + Q         
Sbjct: 297 GEAEMALQLLRARKHGEAAQLAQRLDAMNTDRRVEEDRILEEA-----KRQAESQAASRM 351

Query: 355 GLVLFQRDWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKID 414
           G VL   DWH GVIGI+ASRI E Y+RP +     G+  LKGS RSV    +   L    
Sbjct: 352 GFVLHGEDWHPGVIGIVASRIVEAYYRPTLILCTEGE-TLKGSGRSVSEFDLHAGL---- 406

Query: 415 TQNPGIILKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEE 474
           +Q   + L FGGH  AAG++++    +     FD +VR+ L +  L   +  DG+L  E 
Sbjct: 407 SQCADLFLGFGGHRQAAGMSLKTSALDALRERFDTVVRQALGDTPLTASLKLDGDLGFEH 466

Query: 475 FS----LHTAELLRAGGPWGQAFPEPLF 498
            S    L   E+L+   P+G    EP+F
Sbjct: 467 ASDFTVLKELEMLQ---PFGTGNAEPVF 491