Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  255 bits (651), Expect = 4e-72
 Identities = 205/575 (35%), Positives = 281/575 (48%), Gaps = 42/575 (7%)

Query: 15  LPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSF----KQLHGIDRAVELLFAAIAEQKR 70
           LPD +   L R    RGV+     +  A  L +     + L  ++RA   + AAIA  +R
Sbjct: 39  LPDAVCRTLAR----RGVAPEEAEDFLAPTLRALLPDPRSLRDMERAAARVNAAIARNER 94

Query: 71  IIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMI 130
           I +  D+D DG +S+AL +  LR  G R     VP+R ++GYG +   ++ A+    ++I
Sbjct: 95  IAIFADYDVDGGSSAALLIDWLRAQG-RTATLYVPDRIDEGYGPNIPAME-ALADAHDLI 152

Query: 131 MTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVG 190
           + VD G  S + V  A  +G  VV+ DHHL  + LP   A+VNPN Q        L    
Sbjct: 153 ICVDCGTLSHDPV--AAAQGTDVVILDHHLAEECLPAAHAVVNPNRQDEDGSLSHLCAAA 210

Query: 191 VAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQ 250
           V F L++      RQQ    A G     LM L+DLVAL TVADV PL   NR  V QGL 
Sbjct: 211 VVFLLLVEA---NRQQ---RAAGQPGQDLMALLDLVALATVADVAPLSGVNRAFVRQGLT 264

Query: 251 RIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIH 310
            +     RPG+ AL + A  D R   +   GF LGPRINA GR+     G  LL   + H
Sbjct: 265 -VMGRRERPGLTALSDSAGLD-RAPSSYHLGFVLGPRINAGGRIGAADLGARLLATRDPH 322

Query: 311 AARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGI 370
            A  +A  L+ LN  R++IE  ++  A+   E   L+       G       WH GV+GI
Sbjct: 323 EAAALAERLEKLNAERRDIEAQVRASALEQAETRGLNAPLAWAAG-----EGWHPGVVGI 377

Query: 371 LASRIKEKYHRPVIAFA-EGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAM 429
           +ASR+KE  +RP I    EG +G  KGS RSVPG+ +  A+ ++   + G++LK GGH M
Sbjct: 378 VASRLKETANRPAIVIGLEGDEG--KGSGRSVPGIDLGAAIQRL--AHEGLLLKGGGHKM 433

Query: 430 AAGLTIEEQNFE-RFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGP 488
           AAGLT+     E    RL + L  +  D    KG+ + DG L P   +      +   GP
Sbjct: 434 AAGLTVRRDLLEPAMARLSELLAAQGADRLGPKGLHV-DGVLSPRAITTELITRIEDAGP 492

Query: 489 WGQAFPEPLFD-GEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNV-DLRRWPD 546
           +G + P P F      + + K VGE HL+          P    +DGIAF   D    P 
Sbjct: 493 FGASAPAPRFALPSVTIRYAKPVGESHLRFSF-----AGPCGTRMDGIAFGAFDTPIGPA 547

Query: 547 ASVK---TVRLAYKLDINEFRGNQSLQLMIDHLEA 578
            S     T  LA +L+IN + G    QL +D   A
Sbjct: 548 LSQSARGTFHLAGRLEINSWGGQHKAQLRLDDAAA 582