Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 572 a.a., single-stranded-DNA-specific exonuclease recJ (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  273 bits (698), Expect = 1e-77
 Identities = 174/562 (30%), Positives = 299/562 (53%), Gaps = 32/562 (5%)

Query: 19  IDPLLRRLYLSRGVSNVAQLEKAAKA----LHSFKQLHGIDRAVELLFAAIAEQKRIIVV 74
           I P+L +L + RG++     +K  +     LH    +  +D AVE L  A+ +++RI++ 
Sbjct: 27  ISPILGQLLVQRGITKAGDAKKFFRPQLPDLHDPFLMKDMDIAVERLNKAMGKKERILIY 86

Query: 75  GDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQAIERGAEMIMTVD 134
           GD+D DG T+ AL    ++   S N+DY +P+R+ +GYG+S + VD A E G  +I+ +D
Sbjct: 87  GDYDVDGTTAVALVYKFIQQFYS-NIDYYIPDRYNEGYGISKKGVDYASETGVGLIIVLD 145

Query: 135 NGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFPSKALAGVGVAFY 194
            G+ ++E + YAK+KG+  ++ DHH+P   LP   A++N       +P   L+G GV F 
Sbjct: 146 CGIKAVEEITYAKEKGIDFIICDHHVPDDILPPAVAILNAKRLDNTYPYTHLSGCGVGFK 205

Query: 195 LMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNRILVHQGLQRIRA 254
            M A  ++          G+    L+ L+DLVA+   +D+VP+   NRIL + GL+++ +
Sbjct: 206 FMQAFAIN---------NGIEFHHLIPLLDLVAVSIASDIVPIMGENRILAYHGLKQLNS 256

Query: 255 GLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVELLLCNNIHAARR 314
                G++A+I+V     + +  +D  F +GPRINA+GR+ +    V+LL   +  AA  
Sbjct: 257 N-PSVGMKAIIDVCGLSEKEITVSDIVFKIGPRINASGRIQNGKEAVDLLTEKDFSAALE 315

Query: 315 MASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRDWHQGVIGILASR 374
            A +++  N+TRK++++ M +EA      L+   +R     +VL+  +WH+GVIGI+ASR
Sbjct: 316 KAGQINQYNETRKDLDKSMTEEANNIVANLEGLSERR---SIVLYNEEWHKGVIGIVASR 372

Query: 375 IKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIILKFGGHAMAAGLT 434
           + E Y+RP +      D    GS RSV G  +  A++        ++  FGGH  AAGL+
Sbjct: 373 LTEVYYRPAVVLTR-TDDMATGSARSVSGFDVYKAIEHC----RDLLENFGGHTYAAGLS 427

Query: 435 IEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAELLRAGGPWGQAFP 494
           ++ +N E F R F++ V + +       +I  D E+   + +      L+   P+G    
Sbjct: 428 MKVENVEAFTRRFEEYVSQHILPEQTSAVINIDAEIDFRDITSKFFNDLKKFNPFGPDNI 487

Query: 495 EPLF--DGEFKVLHQKLVG--EKHLKLMLEPLYKGFPTNVMIDGIAFNVDLRRWPDASVK 550
           +P+F     +     K+VG  ++H+KL L        +N +++GIAF          + +
Sbjct: 488 KPIFCTHHVYDYGTSKVVGRDQEHIKLEL----VDNKSNNVMNGIAFGQSSHVRYIKTKR 543

Query: 551 TVRLAYKLDINEF-RGNQSLQL 571
           +  + Y ++ N   RG   LQ+
Sbjct: 544 SFDICYTIEENTHKRGEVQLQI 565