Pairwise Alignments

Query, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Shewanella sp. ANA-3

 Score =  671 bits (1730), Expect = 0.0
 Identities = 335/575 (58%), Positives = 439/575 (76%), Gaps = 6/575 (1%)

Query: 3   EIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELLF 62
           +I RRP  D S LP H+ PLLR+LY  RGV    + E   K L     + G++ A +L+ 
Sbjct: 4   KIVRRPTVDDSHLPAHLPPLLRQLYARRGVMP-NECELVLKGLLRPDTMKGLELAAKLIA 62

Query: 63  AAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQA 122
            A+ ++K I++VGDFDADGATS+++ +LALRM+G+  VDYL+PNRF+ GYGLSPE+V  A
Sbjct: 63  DAMQQEKSILIVGDFDADGATSTSVCLLALRMMGASKVDYLIPNRFDYGYGLSPEIVAVA 122

Query: 123 IERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAFP 182
             + AE+++TVDNG+SS+EGV  AK  G+QVV+TDHHLPG ELP+ DA+VNPN   C F 
Sbjct: 123 ASKQAELLITVDNGISSIEGVAAAKAFGMQVVITDHHLPGHELPDADAIVNPNQPGCQFA 182

Query: 183 SKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNNR 242
           SK++AGVGVAFYLM AL   +R + W+ A+G+ EP L  L+D+VALGTVADVV LD NNR
Sbjct: 183 SKSIAGVGVAFYLMTALRAELRARHWYQARGIAEPNLGTLLDIVALGTVADVVSLDANNR 242

Query: 243 ILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGVE 302
           ILV  GL R+R+G  R GI AL+EVAKR+  R+VA+DFGFA+GPR+NAAGRLD+M+ GVE
Sbjct: 243 ILVEAGLARVRSGRCRVGITALLEVAKRNPARIVASDFGFAVGPRLNAAGRLDEMALGVE 302

Query: 303 LLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQRD 362
            LLC +I  ARRMA+ELD LNQ R+E+E GM+QEA+   E L+L+++ +LP+G+ LFQ D
Sbjct: 303 TLLCEDIMYARRMAAELDSLNQERRELEVGMQQEALKSLEYLKLNEE-QLPWGIALFQED 361

Query: 363 WHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGIIL 422
           WHQGVIGILASRIK+KYHRPVIAFA+ G+G++KGS RS+ GLHMRD L+ +++++PG+I 
Sbjct: 362 WHQGVIGILASRIKDKYHRPVIAFADAGNGEIKGSARSIKGLHMRDLLELVNSRHPGLIS 421

Query: 423 KFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAEL 482
           KFGGHAMAAGLT++   F  F + +D  VRE L    L G + SDGEL P E +L  A+L
Sbjct: 422 KFGGHAMAAGLTLKSGGFATFAKAYDDAVRELLKPEQLTGELWSDGELTPTELTLEIAQL 481

Query: 483 LRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDLR 542
           LR  GPWGQ+F EPLFDG FK++ Q++VGE+HLKL+LE       + VM+D IAFNVDL 
Sbjct: 482 LRNAGPWGQSFEEPLFDGYFKIIQQRIVGERHLKLVLETPC----STVMLDAIAFNVDLH 537

Query: 543 RWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLE 577
            WPDA+++  R+ YKLD+NE+RGN +LQLM++ +E
Sbjct: 538 TWPDATIQHARIVYKLDVNEYRGNFTLQLMVEQIE 572