Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., rRNA small subunit methyltransferase H from Pseudomonas fluorescens FW300-N2E2

 Score =  238 bits (607), Expect = 1e-67
 Identities = 134/280 (47%), Positives = 189/280 (67%), Gaps = 12/280 (4%)

Query: 41  ILAQLGPEGRLYSIDRDPQAIAEAQKI--DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGV 98
           IL++LGP GRL   D+DPQAIA  Q +  +D RF IV   F+ +A       L GKV GV
Sbjct: 2   ILSKLGPGGRLLGFDKDPQAIATGQALAAEDGRFVIVQRSFAELASEVAERGLAGKVSGV 61

Query: 99  LFDLGVSSPQLDDAERGFSFMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGED 158
           L DLGVSSPQLDD ERGFSF+ DGPLDMRMDP+ G+  + ++  A +++I  V +E+GE+
Sbjct: 62  LLDLGVSSPQLDDPERGFSFLNDGPLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEE 121

Query: 159 KHARRIAKAIVEYRENELNEPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINS 218
           + + R+A+A+VE R+    +P  RT  LA+++  A P ++++ K+PATRAFQ  RI++N+
Sbjct: 122 RFSGRMARAVVERRD---IKPFERTGDLAEVLKVANP-AWEKGKNPATRAFQGLRIHVNN 177

Query: 219 ELEEIDTALRGASDILAPQGRLSVISFHSLEDRMVKRFMRKESQG--PQVPHGIPLTQDQ 276
           EL +++  L  A + L   GRL VISFHSLEDR+VK FMRK ++G    +P  +P+  + 
Sbjct: 178 ELGDLEVGLEAALEALEIGGRLVVISFHSLEDRIVKLFMRKLTKGEADNLPRNLPVRFEA 237

Query: 277 IRALGSAKMKTVGKALKPSDQEVELNPRSRSSVLRVAEKL 316
                  K+K  GKA   S+ E++ NPR+RS+V+RVAEKL
Sbjct: 238 F----VPKIKIHGKAQFASEAELKANPRARSAVMRVAEKL 273