Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., methyltransferase from Pseudomonas syringae pv. syringae B728a

 Score =  306 bits (783), Expect = 5e-88
 Identities = 166/320 (51%), Positives = 221/320 (69%), Gaps = 12/320 (3%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           M + F HI+VLL E++E LA++ DG Y+DGTFGRGGHSR IL+QLGP+GRL   D+DPQA
Sbjct: 1   MNSGFTHITVLLEEAVEALAVRADGCYLDGTFGRGGHSRLILSQLGPDGRLLGFDKDPQA 60

Query: 61  IAEAQKI--DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSF 118
           IA  Q +  +D RF IV   F+ +    Q   L GKV G+L DLGVSSPQLDD ERGFSF
Sbjct: 61  IATGQALAAEDGRFVIVQRSFAELGSETQERGLAGKVSGILLDLGVSSPQLDDPERGFSF 120

Query: 119 MKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNE 178
           M DGPLDMRMDP  G+  + ++A A  ++I  V +E+GE++ A+R+A A+V  RE    +
Sbjct: 121 MNDGPLDMRMDPARGISAAEFIATAPAEEIARVFKEYGEERFAKRMANAVVARRE---VQ 177

Query: 179 PLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQG 238
           P  RT+ LA+++  A P ++++ K+PATRAFQ  RI++N+EL +++  L  A D L   G
Sbjct: 178 PFERTADLAEVLKVANP-AWEKGKNPATRAFQGLRIHVNNELGDLEAGLEAALDALEVGG 236

Query: 239 RLSVISFHSLEDRMVKRFMRKESQG--PQVPHGIPLTQDQIRALGSAKMKTVGKALKPSD 296
           RL VISFHSLEDR+VK FMRK ++G    +P  +P+   Q +     K+K  GKA   SD
Sbjct: 237 RLVVISFHSLEDRIVKLFMRKLAKGEADNMPRNLPI---QFKPF-EPKIKIHGKAQFASD 292

Query: 297 QEVELNPRSRSSVLRVAEKL 316
            E + NPRSRS+V+RVAEKL
Sbjct: 293 AETKANPRSRSAVMRVAEKL 312