Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., S-adenosyl-methyltransferase MraW from Synechococcus elongatus PCC 7942

 Score =  220 bits (560), Expect = 4e-62
 Identities = 131/318 (41%), Positives = 193/318 (60%), Gaps = 38/318 (11%)

Query: 3   ASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIA 62
           +SF H++VL  E +EGL     G ++D T G GGHS  +L++  P  ++  +DRDP AIA
Sbjct: 9   SSFHHVTVLQRELVEGLLPDRGGWFLDATLGGGGHSELLLSEW-PNTQVIGLDRDPAAIA 67

Query: 63  EAQ---KIDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFM 119
            +Q   ++   R    H  F+      +R+       G++ DLGVSSPQLD+AERGFSF 
Sbjct: 68  ASQTRLQLYSDRVQFQHVNFANYQPGDRRFQ------GIMADLGVSSPQLDEAERGFSFR 121

Query: 120 KDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEP 179
           +D PLDMRMDPT+ +  +A + + D  D+  +I ++GE++ +RRIA+ IVE R      P
Sbjct: 122 QDAPLDMRMDPTAELTAAAIVNEWDETDLANLIYQYGEERLSRRIARRIVEQR------P 175

Query: 180 LTRTSQLAKLISDAAPKSFKEKK-HPATRAFQAFRIYINSELEEIDTALRGASDILAPQG 238
             RT +L++ I+ A P+S++  + HPATR FQA RI +N EL+ + T L  A D LAP G
Sbjct: 176 FERTLELSEAIAGAVPRSYRYGRIHPATRTFQALRIAVNGELDALQTFLDRAPDWLAPGG 235

Query: 239 RLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQE 298
           R+++ISFHSLEDR++K  +R +              D++  +         K L PS+ E
Sbjct: 236 RIALISFHSLEDRIIKHALRGD--------------DRLTVI-------TRKPLLPSEAE 274

Query: 299 VELNPRSRSSVLRVAEKL 316
           +E NPRSRS+ LR+AE++
Sbjct: 275 IESNPRSRSAKLRIAERV 292