Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., methyltransferase (NCBI) from Rhodospirillum rubrum S1H

 Score =  206 bits (525), Expect = 5e-58
 Identities = 133/322 (41%), Positives = 187/322 (58%), Gaps = 17/322 (5%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           M A   H  V+L+E +  L    DG+Y+DGTFG GG+SR +L +   + R+ +IDRDP A
Sbjct: 1   MNALTPHFPVMLDEVLSALEPHADGLYVDGTFGNGGYSRGLLERA--DCRVIAIDRDPAA 58

Query: 61  IAEAQKIDDP---RFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFS 117
                 ++     RFT++ G F G  E     + + ++DGV  DLGVSS QLD AERGFS
Sbjct: 59  RVRGAALEAEFPGRFTLLSGCF-GDMEQLLAAEGISRIDGVALDLGVSSMQLDQAERGFS 117

Query: 118 FMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELN 177
           F KDGPLDMRM    G   +  +   D D +  ++  +GE++ +R +A AIVE R     
Sbjct: 118 FQKDGPLDMRMGQ-QGQTAADLVNTLDEDRLADILYHYGEERKSRWVAHAIVERRAET-- 174

Query: 178 EPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQ 237
            P +RT+ LA +I     KS ++   PATR+FQA RI +N EL E++ AL  +  +L   
Sbjct: 175 -PFSRTADLATVIRGVVRKS-RDGIDPATRSFQALRIVVNDELGELERALGASERLLRAG 232

Query: 238 GRLSVISFHSLEDRMVKRFMRK---ESQGPQVPHGIPLTQDQIRALGSAKMKTVG-KALK 293
           GRL V++FHSLEDR+VK F+R+   ES+G  V   +P   +          + V  +A+K
Sbjct: 233 GRLVVVAFHSLEDRIVKAFVRQRCGESEG--VSRHLPQASNAGAGNPPPSFQAVSRRAVK 290

Query: 294 PSDQEVELNPRSRSSVLRVAEK 315
           P D E  +NPRSRS+ LR  E+
Sbjct: 291 PLDAETRVNPRSRSARLRAVER 312