Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., S-adenosyl-methyltransferase MraW (RefSeq) from Shewanella loihica PV-4

 Score =  387 bits (994), Expect = e-112
 Identities = 197/317 (62%), Positives = 244/317 (76%), Gaps = 7/317 (2%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           MT  F H+SVLL E++ GL IKP+GIYIDGTFGRGGHSR +L QLGP GRL +IDRDPQA
Sbjct: 1   MTQEFAHLSVLLTETVAGLNIKPEGIYIDGTFGRGGHSREVLKQLGPNGRLIAIDRDPQA 60

Query: 61  IAEAQKI-DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFM 119
           IA A++  DD RF+IVHG F  +A+Y     L GK+DG+LFD GVSSPQLDDAERGFSF+
Sbjct: 61  IAAAEQFADDARFSIVHGGFGQLAQYVDDLGLRGKIDGILFDFGVSSPQLDDAERGFSFL 120

Query: 120 KDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEP 179
           +DGPLDMRMD + G   + WLA+A+++D+ WV + +GE+K+AR IA+ I   R+     P
Sbjct: 121 RDGPLDMRMDNSQGETAAEWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRD---KTP 177

Query: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGR 239
             RT +LA LI+  + KS +  KHPATR FQA RIYINSELE+ID AL GA  +LAPQGR
Sbjct: 178 FLRTKELADLIARVS-KSKERNKHPATRVFQAIRIYINSELEQIDQALEGAVTVLAPQGR 236

Query: 240 LSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEV 299
           LSVISFHSLEDRMVKRF+R+ SQG  VPHG+PLT+ +I    +  +K VGKA+KPS +E+
Sbjct: 237 LSVISFHSLEDRMVKRFIRRHSQGESVPHGLPLTEAEINK--TRLLKAVGKAIKPSAEEI 294

Query: 300 ELNPRSRSSVLRVAEKL 316
           + N R+RSSVLRVAE+L
Sbjct: 295 DRNARARSSVLRVAERL 311