Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH from Pantoea sp. MT58

 Score =  406 bits (1043), Expect = e-118
 Identities = 207/316 (65%), Positives = 258/316 (81%), Gaps = 7/316 (2%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           M  +F+H +VLL+E++ GL I+ DGIYIDGTFGRGGHSR IL+QLG +G+L +IDRDPQA
Sbjct: 1   MQENFKHTTVLLDEAVNGLNIREDGIYIDGTFGRGGHSRLILSQLGEKGKLIAIDRDPQA 60

Query: 61  IAEAQKIDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMK 120
           IA A +I DPRF+I+HGPFS +AEY    DLVGK+DG+L DLGVSSPQLDDAERGFSFM+
Sbjct: 61  IAAAAEITDPRFSIIHGPFSALAEYVSERDLVGKIDGILLDLGVSSPQLDDAERGFSFMR 120

Query: 121 DGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPL 180
           DGPLDMRMDP+ G   + WL  A+  DI +V++ +GE++ A+RIA+AIVE R  E  +P+
Sbjct: 121 DGPLDMRMDPSRGHSAAEWLLHAEEADIAFVLKTYGEERFAKRIARAIVE-RNRE--QPM 177

Query: 181 TRTSQLAKLISDAAPKSFKEK-KHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGR 239
           TRT +LA++IS A P   K+K KHPATR+FQA RI+INSELEEID AL+GA  +LAPQGR
Sbjct: 178 TRTRELAEVISIAMP--VKDKFKHPATRSFQAIRIWINSELEEIDIALKGAVQVLAPQGR 235

Query: 240 LSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEV 299
           LSVISFHSLEDR+VKRFMR +S+GPQVP GIP+T+ Q+RALG  ++K +GK + P D EV
Sbjct: 236 LSVISFHSLEDRLVKRFMRDQSRGPQVPAGIPMTEHQLRALGGRELKLLGK-MSPGDAEV 294

Query: 300 ELNPRSRSSVLRVAEK 315
             NPR+RSSVLR+AEK
Sbjct: 295 SENPRARSSVLRIAEK 310