Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., conserved hypothetical protein TIGR00006 (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  384 bits (986), Expect = e-111
 Identities = 193/317 (60%), Positives = 244/317 (76%), Gaps = 7/317 (2%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           M+  F H+SVLL E++ GL IK DGIYIDGTFGRGGHSR +L +LG +GRL +IDRDPQA
Sbjct: 1   MSQEFAHLSVLLEETVGGLNIKDDGIYIDGTFGRGGHSRQVLQRLGEKGRLIAIDRDPQA 60

Query: 61  IAEAQKI-DDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFM 119
           I  A++  DDPRF IVHG F  +A+Y +   LVGK+DGVL DLGVSSPQLDDAERGFSF+
Sbjct: 61  IEAAKQFADDPRFQIVHGGFGQLADYVEDLGLVGKIDGVLLDLGVSSPQLDDAERGFSFL 120

Query: 120 KDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEP 179
           +DGPLDMRMD + G   + WLA+A+++D+ WV + +GE+K+AR IA+ I   R+     P
Sbjct: 121 RDGPLDMRMDNSQGETAAQWLARAEIEDMAWVFKTYGEEKNARHIARCIAADRD---KTP 177

Query: 180 LTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGR 239
             RT  LA LI+    K+ +  KHPATR FQA RIYINSEL++ID AL GA  +LAPQGR
Sbjct: 178 FLRTKDLADLIA-RITKNKERNKHPATRVFQAIRIYINSELDQIDQALEGALTVLAPQGR 236

Query: 240 LSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEV 299
           LS+ISFHSLEDR+VKRF+R+ SQG  VPHG+P+T+DQI    S K++ +GKA+ PSD+E+
Sbjct: 237 LSIISFHSLEDRIVKRFIRRHSQGESVPHGLPITEDQINK--SRKLRAIGKAIMPSDEEI 294

Query: 300 ELNPRSRSSVLRVAEKL 316
           E N R+RSSVLR+AE+L
Sbjct: 295 ERNARARSSVLRIAERL 311