Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase from Klebsiella michiganensis M5al

 Score =  399 bits (1024), Expect = e-116
 Identities = 198/316 (62%), Positives = 257/316 (81%), Gaps = 7/316 (2%)

Query: 1   MTASFQHISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQA 60
           M  +++H +VLL+E++ GL I+P+GIYIDGTFGRGGHSR IL+QLG EGRL +IDRDPQA
Sbjct: 1   MMENYKHTTVLLDEAVNGLNIRPNGIYIDGTFGRGGHSRLILSQLGAEGRLLAIDRDPQA 60

Query: 61  IAEAQKIDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMK 120
           IA A+ IDDPRF+IVHGPFS +A+Y    +L GK+DG+L DLGVSSPQLDDAERGFSFM+
Sbjct: 61  IAVAKTIDDPRFSIVHGPFSQLADYVGERNLTGKIDGILLDLGVSSPQLDDAERGFSFMR 120

Query: 121 DGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPL 180
           DGPLDMRMDPT G   + WL  AD  DI WVI+ FGE++  +RIA+AIVE   N + EP+
Sbjct: 121 DGPLDMRMDPTRGQSAAEWLQTADEADIAWVIKTFGEERFGKRIARAIVE--RNRI-EPM 177

Query: 181 TRTSQLAKLISDAAPKSFKEK-KHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGR 239
           TRT +LA++++ A P   K+K KHPATR FQA RI++NSELEEI+ AL+ +  +LAP GR
Sbjct: 178 TRTKELAEVVAAATP--VKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLSVLAPGGR 235

Query: 240 LSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEV 299
           LS+ISFHSLEDR+VKRFMR++S+GPQVP G+P+T++Q++ LG  +++ +GK L P ++EV
Sbjct: 236 LSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEEQLKKLGGRELRALGK-LMPGEKEV 294

Query: 300 ELNPRSRSSVLRVAEK 315
             NPR+RSSVLR+AE+
Sbjct: 295 AENPRARSSVLRIAER 310