Pairwise Alignments

Query, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., S-adenosyl-methyltransferase mraW (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  201 bits (511), Expect = 2e-56
 Identities = 122/310 (39%), Positives = 179/310 (57%), Gaps = 16/310 (5%)

Query: 7   HISVLLNESIEGLAIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRDPQAIAEAQK 66
           H+ VLL ES++G+ I PDG Y+D TFG  GHSR IL++LG  GRL   D+D  A  E   
Sbjct: 9   HVPVLLKESVDGMNIHPDGTYVDVTFGGAGHSREILSRLGEGGRLLGFDQDEDA--ERNI 66

Query: 67  IDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFSFMKDGPLDM 126
           ++DP FT V   F  +  + + +D + +VD +L DLGVSS   DD+ERGFSF  DG LDM
Sbjct: 67  VNDPHFTFVRSNFRYLQNFLRYHD-IEQVDAILADLGVSSHHFDDSERGFSFRFDGALDM 125

Query: 127 RMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELNEPLTRTSQL 186
           RM+  +G+  +  +   + + +  +   +GE K++R++A AIV+ R  +    +    ++
Sbjct: 126 RMNKRAGLTAADIVNTYEEERLANIFYLYGELKNSRKLASAIVKARNGQSIRTIGEFLEI 185

Query: 187 AKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQGRLSVISFH 246
            K +        +EKK  A + FQA RI +N E+E +   L  A++ L P GRL VI++H
Sbjct: 186 IKPLFGRE----REKKELA-KVFQALRIEVNQEMEALKEMLAAATEALKPGGRLVVITYH 240

Query: 247 SLEDRMVKRFMRKES-QGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQEVELNPRS 305
           SLEDRMVK  M+  + +G          Q   R + +       K + P + E+E NPRS
Sbjct: 241 SLEDRMVKNIMKTGNVEGKAETDFFGNLQTPFRLVNN-------KVIVPDEAEIERNPRS 293

Query: 306 RSSVLRVAEK 315
           RS+ LR+AEK
Sbjct: 294 RSAKLRIAEK 303