Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., Penicillin-binding protein 2 (PBP-2) from Pseudomonas fluorescens FW300-N2E2

 Score =  161 bits (408), Expect = 6e-44
 Identities = 167/619 (26%), Positives = 276/619 (44%), Gaps = 93/619 (15%)

Query: 15  RVTTAEPAPIFIRWRFYLLLFFVLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQ 74
           R+   E     +R R       V+T  C L+AR+ ++Q+I+ +      +   +  + + 
Sbjct: 6   RIKDHEKDARLVRGRVVFGAIMVVTLICVLIARLYFLQVIQYEYHSTLSENNRVHVQPIP 65

Query: 75  SARGIISDRNGEALAVSVPVEAVWADPVAIYKEGGLVEKDRWYALADVLGL---DRQEMM 131
             RG+I DRNG  +A + P     +  +++ +E     +     + +VL L   DR    
Sbjct: 66  PTRGLIFDRNGVVVADNRP-----SFSLSMTRERSGDWQHVLDVIVEVLQLTPEDRAIFE 120

Query: 132 KKIEDNRSRRF----IYLQRQVSPAMAKYIRELKLAGIGLKEESRRYYPAGEVSAHLVG- 186
           K++   R R F    I  +          + + +L G+ +  +  R+YP G   AH VG 
Sbjct: 121 KRMRQGR-RPFEPVPILFELTEEQIALIAVNQFRLPGVEVVAQLVRHYPQGPHFAHSVGY 179

Query: 187 ----------------VTGIDGHGLEGVERSFDSTLTGESGKSVTRKDKFGRVVENIALE 230
                            +G    G  G+ER ++  L G+ G      +  GRV+  +   
Sbjct: 180 MGRINEKELKTLDPVNYSGTHHIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRT 239

Query: 231 EREEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPN 290
           +   GK I L++D +LQ     A + A+   R    + V LD  TG VLAMV+ PS++PN
Sbjct: 240 DPIPGKDIVLSLDIKLQ----EAAEAALGGRR---GAVVALDPNTGEVLAMVSQPSFDPN 292

Query: 291 NRNDWQSFK------------MRNRVITDAFEPGSTVKPFVVLAALANGIADKNT-IIDT 337
                 SFK            + NRV+   + PGST+KP V +A L +G+   ++ + D 
Sbjct: 293 LFVTGISFKAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVTASSRVYDP 352

Query: 338 GDGTMQIGGSRVRDTSKVGK--ADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGE 395
           G   +     + R+ ++ G    DL   + +S++     LA ++ ++ L    +  GLG+
Sbjct: 353 GYYQLPNYDHKYRNWNRTGDGYVDLETAIMRSNDTYFYDLAHKLGIDRLSSYMNKFGLGQ 412

Query: 396 MSGLDLVGETIGIFPNR------RRWSQFEIATLSFGYG---LAITPIQLAHAYATLGNH 446
              LD+  E+ G+ P+R      RR + F   TL  G G   +  TP+QLA A A + + 
Sbjct: 413 KVSLDMFEESPGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALVASK 472

Query: 447 GKYQPIHIIKGDQHGETRQVVDPKYVNQVL------------EMLETVTQPGGTATRAAV 494
           GK+   H+ K     E ++ VDP  +  ++             M + +    GTA +A++
Sbjct: 473 GKWYRPHLAKTI---EGQKPVDPDPMPDIILRNPSDWQKVNNGMQQVMHGARGTARKASI 529

Query: 495 PG-YRIAAKSGTSRKAIAGGYSDEY-----------FAYTAGVAPVSDPRISLVVMVNEP 542
              YRIA KSGT+ + +A    ++Y            A   G AP  +P+I + VMV   
Sbjct: 530 GAQYRIAGKSGTA-QVVAIKQGEKYDRSKVQERHRDHALFVGFAPADNPKIVVSVMVE-- 586

Query: 543 QGDSYYGGAVAGPVFSEIM 561
            G+S  G  VA PV  +IM
Sbjct: 587 NGES--GSGVAAPVVRQIM 603