Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 582 a.a., penicillin-binding transmembrane protein from Sinorhizobium meliloti 1021

 Score =  219 bits (558), Expect = 2e-61
 Identities = 163/542 (30%), Positives = 263/542 (48%), Gaps = 41/542 (7%)

Query: 41  FCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEAVWAD 100
           +  +  R+    + +P+ +   G     RA +L ++R  I DRNGE LA  +   +++A+
Sbjct: 59  YAVIGGRLVQYGLAQPETVSSIG-----RADSLMASRPDILDRNGEVLATDIRTVSLYAE 113

Query: 101 PVAIYKEGGLVEKDRWYALADVL-GLDRQEMMKKIEDNRSRRFIYLQRQVSPAMAKYIRE 159
           P  I      VE+     LA VL  L+ +E+  K++ N   RF +L+RQ++P     I  
Sbjct: 114 PHKIVDADEAVER-----LATVLPDLNAREIYNKLKSNS--RFQWLRRQLTPKQQSEILA 166

Query: 160 LKLAGIGLKEESRRYYPAGEVSAHLVGVTGIDGHGLEGVERSFDSTLTGESGKSVTRKDK 219
           L + GIG + E RR+YP G  +AH++G   ID  G+ G+ER  D     +          
Sbjct: 167 LGIPGIGFRPEKRRFYPGGPTAAHILGHVNIDNRGVAGMERYIDEQGLAD---------- 216

Query: 220 FGRVVENIALEEREEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVL 279
               +  I +    + +P++L+ID R+Q I    +   M +Y+A +A AV+LDV TG VL
Sbjct: 217 ----LAAIGMTSDAKLEPVRLSIDVRVQNIVRDVIDAGMKNYQAIAAGAVVLDVHTGEVL 272

Query: 280 AMVNAPSYNPNNRNDWQSFKMRNRVITDAFEPGSTVKPFVVLAALANGIADKNTIIDTGD 339
           AM + P Y+PN   +       NR+    FE GST K F +   L +G   K T+ D+ D
Sbjct: 273 AMASVPDYDPNRPAEGAEEGWMNRMSNGTFEMGSTFKTFTIAMGLDSG---KVTLNDSFD 329

Query: 340 GT--MQIGGSRVRD-TSKVGKADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEM 396
            T  ++IGG  ++D   K     +  I + SSNIG AK+A  + +       + +GL  +
Sbjct: 330 ATAPIRIGGFTIKDFHGKRRVLTVPEIFQYSSNIGTAKIADLIGIPGHKEFLTRIGL--L 387

Query: 397 SGLDLVGETIGIFPNRRRWSQFEIATLSFGYGLAITPIQLAHAYATLGNHGKYQPIHIIK 456
           + L      +      R W +    T+SFG+G++ TP+Q A A A L N GK  P   + 
Sbjct: 388 TRLPTELPEVKAPSQPREWKKINSITISFGHGVSTTPLQTAVAGAALVNGGKLIPPTFLP 447

Query: 457 GDQH--GETRQVVDPKYVNQVLEMLETVTQPGGTATRAAVPGYRIAAKSGTSRKAIAGGY 514
             +    E    V  K  ++ +  L       G+  RA VPG+ +  K+GT+ K + G Y
Sbjct: 448 RSEEAASELASAVVKKSTSEDMRYLLRWNGIAGSGKRALVPGFNVGGKTGTADKVVNGRY 507

Query: 515 -SDEYFAYTAGVAPVSDPRISLVVMVNEP---QGDSYYGGAVAGPVFSEIMKGALQILNI 570
            SD  F       P+ DP+  ++  ++ P   +G     G+ A P+  +I+  +  +L +
Sbjct: 508 ASDLNFNAFLAAFPIDDPKYMVLTFIDAPKTGEGGGRTAGSNAAPMVRDIISRSAPLLGV 567

Query: 571 AP 572
            P
Sbjct: 568 EP 569