Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 610 a.a., peptidoglycan glycosyltransferase (RefSeq) from Shewanella amazonensis SB2B

 Score =  135 bits (339), Expect = 6e-36
 Identities = 143/607 (23%), Positives = 256/607 (42%), Gaps = 88/607 (14%)

Query: 19  AEPAPIFIRWRFYLLLFFVLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARG 78
           A  A +F R   +  L  V+  F  L+  + ++Q+    +     +   IR   +  +RG
Sbjct: 5   AAEAALFKRRAIFTFLC-VVALFGVLLTNLYHLQVTSYADYTTRSNDNRIRVTPVAPSRG 63

Query: 79  IISDRNGEALAVSVPVEAVWADPVAIYKEGGLVEKDRWYALADVLGLDRQ---EMMKKIE 135
           +I DRNG  LA + PV ++   P  +      + +     L+ V+ L  +   E ++ ++
Sbjct: 64  LIYDRNGVLLAENQPVYSLELIPEKVKNIPQTLTQ-----LSTVIPLSEEAQAEFLEALK 118

Query: 136 DNRSRRFIYLQRQVSP--AMAKYIRELKLAGIGLKEESRRYYPAGEVSAHLVGVTG---- 189
            +R  + + L+  ++     A  + + +  G+ ++   +R+YP GE+  H++G  G    
Sbjct: 119 YHRRFKPLTLRDNLTEEEVAAFSVNQHQFPGVRVEAGLKRFYPHGELLTHVLGFVGKINA 178

Query: 190 -----------------IDGHGLEGVERSFDSTLTGESGKSVTRKDKFGRVVENIALEER 232
                                G +GVE+ +++ L G+ G      +  GR +  +     
Sbjct: 179 KDRTALEKADRWPDYAASKDIGKQGVEKYYENLLHGKPGHLEEEVNNRGRTIRTLKTVPP 238

Query: 233 EEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPN-- 290
           E G+ + LT+D  LQ       K+AM        + V +D + G ++AMV++PSY+PN  
Sbjct: 239 EPGQDLYLTLDINLQ-------KKAMELLSGRRGTIVAIDPRDGGIMAMVSSPSYDPNLF 291

Query: 291 ----NRNDWQSF------KMRNRVITDAFEPGSTVKPFVVLAALANGIADKNT-IIDTGD 339
               +  D+ +        + NR     + P ST+KP + L  L   +  + T I D G 
Sbjct: 292 VQGISSKDYSALLNDKARPLINRATQGLYAPASTIKPHMALMGLEEQVVTERTRIWDPGY 351

Query: 340 GTMQIGGSRVRDTSKVGK--ADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEMS 397
             M     + RD  K G    D+   + +S +I    +  +M ++ +       G GE +
Sbjct: 352 WQMPGVERKWRDWKKWGHGYVDVYHAIVESCDIFFYDMVHKMGIDKIAAFMHQFGFGEST 411

Query: 398 GLDLVGETIGIFP--------NRRRWSQFEIATLSFGYGL-AITPIQLAHAYATLGNHGK 448
           G+D+  E+ GI P        + + W   +  ++  G G    TPIQLA+A A L N GK
Sbjct: 412 GVDIFEESAGIMPSSDWKRIRHNQPWYPGDTISVGIGQGYWTATPIQLANATAILANRGK 471

Query: 449 YQPIHIIKGDQHGETRQVVDPKYVNQVL-------EMLETVTQPGGTATRAAVPGYRIAA 501
               H++K  +    +    P+ +  V        E++    +     +R     Y  A 
Sbjct: 472 RFVPHLLKAMKDNSAKIERPPEEMPPVALKNPRNWEIINEAMRQTAHKSRFTDATYTAAM 531

Query: 502 KSGTSR------------KAIAGGYSDEYFAYTAGVAPVSDPRISLVVMVNEPQGDSYYG 549
           K+GT++              +A    D   A     AP   P+I L V++     ++ +G
Sbjct: 532 KTGTAQVFSVAQDAKYDHDKVAEHLRDN--ALIVAYAPFESPKIVLAVVLE----NAGWG 585

Query: 550 GAVAGPV 556
           GA AGPV
Sbjct: 586 GANAGPV 592