Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., Probable penicillin-binding membrane protein PbpB from Mycobacterium tuberculosis H37Rv

 Score =  210 bits (534), Expect = 2e-58
 Identities = 167/541 (30%), Positives = 258/541 (47%), Gaps = 46/541 (8%)

Query: 75  SARGIISDRNGEALAVSVPVEAVWADPVAIYKEGGLVEK------DRWYALADVLGL--- 125
           +ARG I DRN + LA ++   A+   P  I ++     K      D    L D+      
Sbjct: 133 AARGSIVDRNNDRLAFTIEARALTFQPKRIRRQLEEARKKTSAAPDPQQRLRDIAQEVAG 192

Query: 126 ------DRQEMMKKIEDNRSRRFIYLQRQVSPAMAKYIRELKLAGIGLKEESRRYYPAGE 179
                 D   ++KK++ + +  F+YL R V PA+A  I   K   +G + +  R YP G 
Sbjct: 193 KLNNKPDAAAVLKKLQSDET--FVYLARAVDPAVASAICA-KYPEVGAERQDLRQYPGGS 249

Query: 180 VSAHLVGVTGIDGHGLEGVERSFDSTLTGESGKSVTRKDKFGRVVENIALEERE--EGKP 237
           ++A++VG    DGHGL G+E S D+ L G  G     +   G V+        +   G  
Sbjct: 250 LAANVVGGIDWDGHGLLGLEDSLDAVLAGTDGSVTYDRGSDGVVIPGSYRNRHKAVHGST 309

Query: 238 IQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPNNRNDWQS 297
           + LT+D  +Q    + V+QA     A + SAV+LD KTG VLAM N  +++P+     Q 
Sbjct: 310 VVLTLDNDIQFYVQQQVQQAKNLSGAHNVSAVVLDAKTGEVLAMANDNTFDPSQDIGRQG 369

Query: 298 FK-MRNRVITDAFEPGSTVKPFVVLAALANGIADKNTIIDTGDGTMQIGGSRVRDTSKVG 356
            K + N  ++  FEPGS  K     A + +G++  + ++    G++Q+GG  V D  + G
Sbjct: 370 DKQLGNPAVSSPFEPGSVNKIVAASAVIEHGLSSPDEVLQV-PGSIQMGGVTVHDAWEHG 428

Query: 357 KADLTL--ILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEMSGLDLVGETIGIFPNRRR 414
               T   +  KSSN+G   L+  +  E    M    GLG+ +G+ L GE+ G+ P   +
Sbjct: 429 VMPYTTTGVFGKSSNVGTLMLSQRVGPERYYDMLRKFGLGQRTGVGLPGESAGLVPPIDQ 488

Query: 415 WSQFEIATLSFGYGLAITPIQLAHAYATLGNHGKYQPIHIIK------GDQHGETR---- 464
           WS    A L  G GL++T +Q+   Y  + N G   P  IIK      G +  E R    
Sbjct: 489 WSGSTFANLPIGQGLSMTLLQMTGMYQAIANDGVRVPPRIIKATVAPDGSRTEEPRPDDI 548

Query: 465 QVVDPKYVNQVLEMLETVTQ------PGGTATRAAVPGYRIAAKSGTSRKAIAG---GYS 515
           +VV  +    V +ML  V Q        GT   A VPGY++A K+GT+++   G    + 
Sbjct: 549 RVVSAQTAQTVRQMLRAVVQRDPMGYQQGTGPTAGVPGYQMAGKTGTAQQINPGCGCYFD 608

Query: 516 DEYFAYTAGVAPVSDPRISLVVMVNEPQGDSYYG-GAVAGPVFSEIMKGALQILNI--AP 572
           D Y+   AG+A   +PR  + +M++ P  +S    G  A P+F  I    +Q  N+  +P
Sbjct: 609 DVYWITFAGIATADNPRYVIGIMLDNPARNSDGAPGHSAAPLFHNIAGWLMQRENVPLSP 668

Query: 573 D 573
           D
Sbjct: 669 D 669