Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., Peptidoglycan D,D-transpeptidase MrdA from Enterobacter sp. TBS_079

 Score =  149 bits (377), Expect = 3e-40
 Identities = 163/622 (26%), Positives = 272/622 (43%), Gaps = 94/622 (15%)

Query: 18  TAEPAPIFIRWRFYLLLFFVLTAFCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSAR 77
           TAE A +F+R R  +    +L     L+A +  +QI+   +     +   I+   +  +R
Sbjct: 11  TAESA-LFVR-RALVAFTGILLLTGVLIANLYNLQIVRFTDYQTRSNENRIKLVPIAPSR 68

Query: 78  GIISDRNGEALAVSVPVEAVWADPVAIYKEGGLVEKDRWYALADVLGLDRQEMMK-KIED 136
           GII DRNG  LA++  +  +   P  +      +E     AL  V+ L   ++   K E 
Sbjct: 69  GIIYDRNGTPLALNRTIYQIEMMPEKVDNVQDTLE-----ALKGVVDLTDDDIAAFKKER 123

Query: 137 NRSRRFIYLQRQVSPAMAKYIR----ELKLAGIGLKEESRRYYPAGEVSAHLVG-VTGID 191
            RS RF  +  + +    +  R    + +  G+ +K   RRYYP G    H++G V+ I+
Sbjct: 124 ARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALTHVIGYVSKIN 183

Query: 192 GHGLE--------------------GVERSFDSTLTGESGKSVTRKDKFGRVVENIALEE 231
              +E                    G+ER ++  L G++G      +  GRV+  +    
Sbjct: 184 DKDVERLDKDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRGRVIRQLKEVP 243

Query: 232 REEGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVLAMVNAPSYNPNN 291
            + G  + LT+D +LQ    + ++  +A  RA   + V+ D ++G +LAMV+ PSY+PN 
Sbjct: 244 PQAGHDVYLTLDLKLQ----QYIETLLAGSRA---AVVVTDPRSGGILAMVSMPSYDPNL 296

Query: 292 RNDWQSFK------------MRNRVITDAFEPGSTVKPFVVLAALANGIADKNT-IIDTG 338
             D  S K            + NR     + P STVKP+V ++AL+ G+ ++NT + D G
Sbjct: 297 FVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVINRNTSLFDPG 356

Query: 339 DGTMQIGGSRVRDTSKVGKADL--TLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEM 396
              +     R RD  K G   L  T  L++S++    ++A +M ++ L    S  G G  
Sbjct: 357 WWQLPGSEKRYRDWKKWGHGHLNVTKSLEESADTFFYQVAYDMGIDRLSEWMSKFGYGHY 416

Query: 397 SGLDLVGETIGIFPNR--------RRWSQFEIATLSFGYGL-AITPIQLAHAYATLGNHG 447
           +G+DL  E  G  P R        + W Q +   +  G G    TPIQ+  A   L N G
Sbjct: 417 TGVDLSEERSGNMPTREWKLKRFKKPWYQGDTIPVGIGQGYWTATPIQMNKAMMILINDG 476

Query: 448 KYQPIHIIKGD-QHGETRQVVDPKY--VNQVLE---------MLETVTQPGGTATR--AA 493
             +  H+++   + G+    + P    V  +           M     +P GTA +  A 
Sbjct: 477 VVKVPHLLQSTVEDGKKVPWIQPHEAPVGDIHSGYWEIAKDGMYGVANRPNGTAHKYFAG 536

Query: 494 VPGYRIAAKSGTSRKAIAGGYSDEYF------------AYTAGVAPVSDPRISLVVMVNE 541
            P Y++AAKSGT++  + G  ++E +                  AP  +P+++ V M+ E
Sbjct: 537 TP-YKVAAKSGTAQ--VFGLKANETYNAHRIAERLRDHKLMTAFAPYDNPQVA-VAMILE 592

Query: 542 PQGDSYYGGAVAGPVFSEIMKG 563
             G     G +   +   IM G
Sbjct: 593 NGGAGPAVGTIMRQILDHIMLG 614