Pairwise Alignments

Query, 580 a.a., penicillin-binding protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., penicillin-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  288 bits (737), Expect = 5e-82
 Identities = 182/555 (32%), Positives = 279/555 (50%), Gaps = 31/555 (5%)

Query: 41  FCALVARVAYIQIIEPDNLIKEGDLRSIRAKTLQSARGIISDRNGEALAVSVPVEAVWAD 100
           +C L  R  ++Q+IE D L      + + A+ +   RG I DRNG+ LA SV + +V+  
Sbjct: 49  WCLLWMRAWHVQVIEGDRLAGMARRQHVAAELVTGQRGSILDRNGQVLARSVEMRSVYVH 108

Query: 101 PVAIYKEGGLVEKDRWYALADVLGLDRQEMMKKIEDNRSRRFIYLQRQVSPAMAKYIREL 160
           P+ +              L+  L L   ++   + + R  RF +L R+V    A  +RE 
Sbjct: 109 PLEVQDVDNTAA-----VLSRCLDLPLPQVRAALSERR--RFAWLARKVDDRKANLVREA 161

Query: 161 KLAGIGLKEESRRYYPAGEVSAHLVGVTGIDGHGLEGVERSFDSTLTGESGKSVTRKDKF 220
           KL+G+GL  E  R YP  +++  L+G  G+D  GLEGVER+ D +L G S + V  +D  
Sbjct: 162 KLSGVGLTTEYERIYPFRQMAGQLLGFVGLDDKGLEGVERAMDDSLAGTSTRMVMERDAA 221

Query: 221 GRVVENIALEERE-EGKPIQLTIDQRLQAIAFRAVKQAMADYRATSASAVMLDVKTGAVL 279
           GR        + +  G  ++LTID ++Q  A  A+  A+  Y A    A+++DV++G +L
Sbjct: 222 GRRFYLPGSSDNDIRGGDVRLTIDMQVQFFAEEALADAVDTYEAKWGGALVVDVQSGDIL 281

Query: 280 AMVNAPSYNPNNRNDWQSFKMRNRVITDAFEPGSTVKPFVVLAALANGIADKNTIIDTGD 339
           A    P +NPN   ++   + RNR+ +DA EPGST KPF+V A L  G+   +T+     
Sbjct: 282 AWAQYPFFNPNAYREYTPARWRNRLASDALEPGSTFKPFLVAAGLQEGVITPDTLFYCEK 341

Query: 340 GTMQIGGSRVRDTSKVGKADLTLILKKSSNIGVAKLALEMPLEALLGMYSSVGLGEMSGL 399
           G  +     +RDT       +  I++ SSNIG AK+ LE+           +G GE +G+
Sbjct: 342 GKWKTRTINIRDTHSYDWLPVNKIMRYSSNIGCAKIGLELGTRRYHDYLVKLGFGERTGV 401

Query: 400 DLVGETIGIFPNRRRWSQFEIATLSFGYGLAITPIQLAHAYATLGNHGKYQPIHII---K 456
             V E+ GI    R WS+ ++ T SFG  +++T +Q+A  Y TL N G  + + +     
Sbjct: 402 P-VAESKGILRKPRDWSEADLITASFGQSVSVTALQMAQGYLTLANDGVLKKLRLFIPEN 460

Query: 457 GDQH-----------------GETRQVVDPKYVNQVLEMLETVTQPGGTATRAAVPGYRI 499
           G Q                   E R++   K   QV++ML  V +  GT TRA + G  I
Sbjct: 461 GAQQQDVVPSPSPVGPGVAVAAEPRRIFSHKVARQVMDMLRDVVEEDGTGTRARIAGITI 520

Query: 500 AAKSGTSRKA-IAGGYSDEYFAYTAGVAPVSDPRISLVVMVNEPQGDSYYGGAVAGPVFS 558
             K+GT++KA  +G Y     A   G+ P+  PR  + VMV+EP   S YGG VA PVF 
Sbjct: 521 GGKTGTAQKADSSGSYGKGRLASFVGLVPIDRPRYLIFVMVDEPT-RSPYGGVVAAPVFK 579

Query: 559 EIMKGALQILNIAPD 573
            +    +    + P+
Sbjct: 580 HVALRTMAYHGLLPE 594