Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate--D-alanyl-D-alanine ligase (EC 6.3.2.10) from Pseudomonas fluorescens FW300-N2E2

 Score = 84.7 bits (208), Expect = 6e-21
 Identities = 103/412 (25%), Positives = 161/412 (39%), Gaps = 43/412 (10%)

Query: 47  LELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPV 106
           + +DSR I  G  FVA+ G   DG  ++++  A+GA   L E +  +          +P 
Sbjct: 28  VSIDSRAIAPGQLFVALAGPRFDGHDYLNEVAAKGAVAALVEREVTNTT--------LPQ 79

Query: 107 IYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGN 166
           + +A+  Q L +L      G    +  +TG++GKTT+ +++A    +L  +  V+ T GN
Sbjct: 80  LLVADTRQALGQLGALNRAGFDKPVAAITGSSGKTTVKEMLA---SILRTRGPVLATRGN 136

Query: 167 GFLNALEPAANTTGNALQIQATLRDLA-ERGAQYTALETSSHGLVQGRVKKLHFVAGVFS 225
                         N L +  TL +LA E  A    L  S  G +   V        V +
Sbjct: 137 ------------LNNDLGVPLTLLELAPEHSAAVIELGASRLGEIAYTVAMTKPHVAVLN 184

Query: 226 NLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQLPQAIGVSLVTK 284
           N    H+   G  E    AK  +     A   A++N+DD     W  +  +   V     
Sbjct: 185 NAGTAHVGEFGGPEKIVEAKGEIIEGLDADGVAVLNLDDKAFEIWKTRAGER-KVLTFAL 243

Query: 285 PNTAQAIWAREVAYAESGI-TLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGFEK 343
            N A   +A ++     G    N  S  G   +   L+G  N  N L A A   +LG   
Sbjct: 244 SNLAANFYASDLDRDARGCPAFNLHSPDGAERVQLNLLGTHNVANALAAAAAAHALGVSL 303

Query: 344 SALLATAPKLRPVLGRMELFQREQKAKMVVD--YAHTPDALEKALRAL------RVHCAG 395
             ++A    ++PV GR  + Q       V+D  Y   P ++  A+  L       V   G
Sbjct: 304 PGIVAGLNAVQPVKGR-SVAQLASNGMRVIDDTYNANPSSMCAAVDILAGFSGRTVLVLG 362

Query: 396 QL-----WAIVGCG--GDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440
            +     WA  G    G   RGK   + A+    A  V    ++ R  + QA
Sbjct: 363 DIGELGEWAQQGHHDVGAYARGKVDALYAVGPMMAHAVAAFGEHARHFTTQA 414