Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase (EC 6.3.2.13) from Pseudomonas fluorescens FW300-N2E2

 Score =  372 bits (955), Expect = e-107
 Identities = 209/469 (44%), Positives = 280/469 (59%), Gaps = 7/469 (1%)

Query: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101
           L+I  L LDSR +++GD F+A+ G   DGR  I  A+ +GA  V  E         V   
Sbjct: 16  LLIRELALDSRNVRAGDLFLAVPGARFDGRAHIADALKRGAAAVAYEV----AGATVLPI 71

Query: 102 AGVPVIYLAELGQHLSELAGRLYG--GHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAA 159
             VP+I +  L   LS++AGR YG    H  L+GVTGTNGKT++TQL+AQ L+LLG    
Sbjct: 72  TDVPLIPVKGLAAQLSDIAGRFYGDPSRHLNLVGVTGTNGKTSVTQLVAQALDLLGQHCG 131

Query: 160 VMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHF 219
           ++GT GNGF  ALE   +TT N + +QATL DL + GA+  A+E SSHGL QGRV  L F
Sbjct: 132 IVGTLGNGFHGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAF 191

Query: 220 VAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGV 279
              V +NLSRDHLDYHGTM+AY  AK  LF+ +  +  +IN+DD  G Q   +  ++  +
Sbjct: 192 DVAVLTNLSRDHLDYHGTMQAYGEAKAKLFAWNDLKCRVINLDDEFGRQLAAEKRESRLI 251

Query: 280 SLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339
           +   +  +A  ++ R+  + + G+     +  GE  L + L+G FN  N+L A+  LL L
Sbjct: 252 TYSLEDASAY-LYVRQAQFNDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAIGALLGL 310

Query: 340 GFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEKALRALRVHCAGQLWA 399
            +    +L   PKL    GRM+      +  +VVDYAHTPDALEK L ALR H  G+L  
Sbjct: 311 DYALDEVLKVLPKLEGPAGRMQRLGGGTQPLVVVDYAHTPDALEKVLTALRPHAKGRLLC 370

Query: 400 IVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIEH 459
           + GCGGDRDRGKRP+MA + E+ AD V++TDDNPR+E PQ I  D+ AG T  +      
Sbjct: 371 LFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRTEDPQRIFDDIRAGFTAVDNVTFVA 430

Query: 460 HRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQQLL 508
            R QA +  +  A A D+I+LAGKGHEDYQ +  E   +SD   A   L
Sbjct: 431 GRGQAIAQLIASASADDVIVLAGKGHEDYQEINGERHAFSDLVEADHAL 479