Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase from Pseudomonas stutzeri RCH2

 Score = 77.8 bits (190), Expect = 8e-19
 Identities = 86/361 (23%), Positives = 145/361 (40%), Gaps = 26/361 (7%)

Query: 50  DSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAGVPVIYL 109
           DSR I+ G  F+A+ G   DG  ++    A+GA   L E + +         + +P + +
Sbjct: 31  DSRAIEPGQLFIALTGPRFDGHAYLADVAAKGAVAALVEREIE--------TSTLPQLVV 82

Query: 110 AELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFL 169
           A+    L  L        +  +  +TG++GKT++ +++A  L     + AV+ T GN   
Sbjct: 83  ADTRLALGLLGASNRNAFNGPVAAITGSSGKTSVKEMLASILRSAYGQNAVLATRGN--- 139

Query: 170 NALEPAANTTGNALQIQATLRDLA-ERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLS 228
                      N L    TL +L  E  A    L  S  G +   VK +     + +N  
Sbjct: 140 ---------LNNDLGAPLTLLELCDEHRAAVIELGASRPGDIAYTVKLVRPDVSLITNAG 190

Query: 229 RDHLDYHGTMEAYAAAKFSLFSEHACQN-AIINVDDAVGAQWVKQLPQAIGVSLVTKPNT 287
             H+   G       AK  +    +    A++N DD     W +++     VS     N 
Sbjct: 191 SAHVGEFGGPHKIVEAKGEILDGLSESGIAVLNRDDKAYPIWAERVAGKRIVSFGLD-NP 249

Query: 288 AQAIWAREVAYAESGI-TLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGFEKSAL 346
                A  +AY + G  +       G   +   L+G  N  N L A A   +LG +  A+
Sbjct: 250 LADFSAGSIAYDQRGCPSFVLTGPLGNLRIQLNLLGRHNVANALAAAAAAYALGVDADAV 309

Query: 347 LATAPKLRPVLGRMELFQREQKAKMVVD-YAHTPDALEKALRALRVHCAGQLWAIVGCGG 405
           +A   +L+PV GR          +++ D Y   P ++  A+  L    AG+   ++G  G
Sbjct: 310 VAGLQQLQPVKGRAVAQMLANGVRLIDDSYNANPASICAAIDVL-ASFAGRTILVLGDMG 368

Query: 406 D 406
           +
Sbjct: 369 E 369