Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  399 bits (1025), Expect = e-115
 Identities = 223/489 (45%), Positives = 296/489 (60%), Gaps = 11/489 (2%)

Query: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 83
           + +L+APW      +     +    +DSR + +G  F+A+ G+  DGR ++D A A+GA 
Sbjct: 4   LKDLLAPWFHYAGTESVHAPV----IDSRQLTAGGLFIAVPGYKTDGRAYLDAAFAKGAA 59

Query: 84  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYGGHHNQL--IGVTGTNGKT 141
             L   D    +G V Y  G+ + +  +L + +S +A + Y     +L  +GVTGTNGKT
Sbjct: 60  AALVHTDDPDEHGKVSYEPGLCIAFF-QLNRQVSAVARQYYALTRGKLRVVGVTGTNGKT 118

Query: 142 TITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTA 201
           +++QLIAQ  ELLG KAAVMGT GNG    L+   NTT +A+++ A L D   +GA+  A
Sbjct: 119 SVSQLIAQLTELLGDKAAVMGTLGNGLWGQLQDVGNTTADAVRVMADLYDFEHQGAKVCA 178

Query: 202 LETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINV 261
           +E SSHGLVQGRV+ + F   VF+NLSRDHLDYHG M+ YAAAK  LF+  +    +IN+
Sbjct: 179 MEVSSHGLVQGRVEAVPFEVAVFTNLSRDHLDYHGDMDNYAAAKRRLFAFGSLSARVINL 238

Query: 262 DDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVA-YAESGITLNFESSWGEGELHAPL 320
           DD VG QW   +  A G S +     A+A W  E A +  +G + N     G+  L   L
Sbjct: 239 DDKVGEQWFDGMGCATGFSCL---GHAKADWRFENAHFHHAGFSANLVWPGGQKPLECRL 295

Query: 321 IGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPD 380
           +G FN  NLL AL  +  LG++   L+A A KL  V GRME F R+    +VVDYAHTPD
Sbjct: 296 LGAFNLSNLLAALCAMAQLGYQVPDLVAAAAKLEAVPGRMECFPRKDGVSLVVDYAHTPD 355

Query: 381 ALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQA 440
           A+E+AL+A R HC G LW + GCGGDRD+GKRP+MA  AE FAD ++LT DN RSE P  
Sbjct: 356 AIEQALKAARHHCEGALWIVFGCGGDRDKGKRPLMAEAAEAFADCLVLTSDNARSEDPAV 415

Query: 441 IVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSD 500
           I+ DM AGL  PERA     R  A  +A+  A   D+ILLAGKGHE YQ +A     Y +
Sbjct: 416 ILEDMKAGLDAPERALCMVDRVAAIRHAVSMAKPGDLILLAGKGHETYQEIAGVKHEYDE 475

Query: 501 RETAQQLLE 509
           R  A+ L E
Sbjct: 476 RALARVLSE 484