Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (NCBI) from Rhodospirillum rubrum S1H

 Score =  259 bits (661), Expect = 2e-73
 Identities = 173/467 (37%), Positives = 238/467 (50%), Gaps = 12/467 (2%)

Query: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101
           L I  L  DSR +  G  F A+ G   DGR FI  A+A GA+ VLA          +   
Sbjct: 28  LAIAGLTADSRAVAPGWLFAALPGVKADGRAFIPAALAAGASAVLAPEGTA-----LPPD 82

Query: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161
           A   ++  A   Q  + +A    G     ++ VTGTNGKT+      Q  + LG  AA +
Sbjct: 83  APAALVTAANPRQAFARMAAAFAGAQPATVVAVTGTNGKTSSVSFTRQIWDRLGRTAASL 142

Query: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221
           GT G          + TT + + +   L ++ E G    A+E SSHGL Q R+  +   A
Sbjct: 143 GTLGAESGVYRRAGSMTTPDPVSLHKMLAEMTEAGVDALAMEASSHGLDQYRLDGVRLSA 202

Query: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN--AIINVDDAVGAQWVKQLPQAIGV 279
             F+NL+RDHLDYH TM+AY AAK  LF E   +   A++N DD      +  L +  G 
Sbjct: 203 AAFTNLTRDHLDYHHTMDAYLAAKARLFGEVLGREGVAVLNADDPAFPT-LAALCRDRGQ 261

Query: 280 SLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSL 339
           S++    +A+ +    V+    G +L+ E       +  PL+G+F A N+L AL   ++ 
Sbjct: 262 SVLDYGRSAKTLRLAGVSAKAHGQSLDLELFGRHHSVLLPLVGDFQAMNVLCALGLAIAT 321

Query: 340 GFEKSALLATAPKLRPVLGRMELFQREQK-AKMVVDYAHTPDALEKALRALRVHCAGQLW 398
           G    A +AT   L  V GR+E+  R    A + VDYAHTPD L  ALRALR HC G+L 
Sbjct: 322 GAPVDAAVATLASLEGVPGRLEMVARRASGAPVYVDYAHTPDGLVTALRALRPHCRGKLV 381

Query: 399 AIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIE 458
            + GCGGDRDR KRP+M     + AD  ILTDDNPRSE P AI A+   G   P+   I+
Sbjct: 382 CVFGCGGDRDRAKRPLMGRAVAEGADVAILTDDNPRSEDPAAIRAEARVGC--PDAIEID 439

Query: 459 HHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQ 505
             R  A    +   G  D++++AGKGHE  Q +      + D + A+
Sbjct: 440 -GRDAAIRAGVALLGPNDLLVIAGKGHETGQTIGTVVHPFVDADHAR 485