Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  405 bits (1040), Expect = e-117
 Identities = 224/485 (46%), Positives = 298/485 (61%), Gaps = 11/485 (2%)

Query: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 83
           + +L+APW      +     ++HL LDSR I  G  FVA+ GH VDGR ++D A++QGA 
Sbjct: 3   LCDLLAPWFHYAGGES----LSHLTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAV 58

Query: 84  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLY--GGHHNQLIGVTGTNGKT 141
             L   D    +G V    G+  IY  +L + LS LA +LY  G    +LIGVTGTNGKT
Sbjct: 59  AALIHTDDPAEHGKVSQDNGLR-IYFFQLQRQLSALASQLYVLGRDRIKLIGVTGTNGKT 117

Query: 142 TITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTA 201
           ++TQLIAQ  + LG  AAVMGT GNG    L  + NTT + + +   L D   +G    A
Sbjct: 118 SVTQLIAQLSDGLGKPAAVMGTLGNGLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCA 177

Query: 202 LETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINV 261
           +E SSHGLVQGRV  + F   VF+NLSRDHLDYHG+M+AY AAK  LF   +  + +IN+
Sbjct: 178 MEVSSHGLVQGRVDAVPFDVAVFTNLSRDHLDYHGSMDAYGAAKQRLFRFSSLSHGLINL 237

Query: 262 DDAVGAQWV--KQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAP 319
           DD VG QW+  K+    +G S+  +     AI+ +EV     G++       GE ++ +P
Sbjct: 238 DDPVGRQWIQDKRCKGLVGFSI--QGQEGAAIYTKEVKQHSQGVSATLVWPEGEAKIDSP 295

Query: 320 LIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTP 379
           L+G FN  NL+ AL  L   G+  + LL     L+PV GRME F  ++   +VVDYAHTP
Sbjct: 296 LLGIFNLSNLVAALGALYLSGYAMAQLLTQVSSLKPVAGRMERFTTQEGVTLVVDYAHTP 355

Query: 380 DALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQ 439
           DA+E+ALRALR HC G+LW + GCGGDRD+GKRP+MA  AE+ AD V++T DN RSE P 
Sbjct: 356 DAIEQALRALRGHCRGKLWCVFGCGGDRDKGKRPLMARAAEENADCVMVTSDNARSEDPM 415

Query: 440 AIVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYS 499
           AI+ D++AGL  P+ A  +  R QA    +  A   D+ILLAGKGHE YQ +A + + Y 
Sbjct: 416 AIIQDVLAGLNKPQIALTQVDRQQAIREVVTLASNGDLILLAGKGHETYQEIAGKRLDYD 475

Query: 500 DRETA 504
           +R  A
Sbjct: 476 ERALA 480