Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq) from Shewanella loihica PV-4

 Score = 77.4 bits (189), Expect = 1e-18
 Identities = 82/323 (25%), Positives = 146/323 (45%), Gaps = 28/323 (8%)

Query: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101
           L ++ +  DSR++ +   FVA++G   D   F  KA+  GA+ +L E          E  
Sbjct: 22  LSVSKVSSDSRVVDAQTLFVALKGERFDAHDFAAKAVMDGASALLVER---------ELP 72

Query: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161
              P + +A   + + ++   +      + + +TG+NGKT++ +++A    +L  +  V+
Sbjct: 73  IAAPQLIVANSQKAMGQIGAHVKQCVAPKSVALTGSNGKTSVKEMVA---TILSTQHQVL 129

Query: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221
            T GN F N  E     T   L+ Q     + E GA +      +  LVQ  V       
Sbjct: 130 YTAGN-FNN--EVGVPLTLLRLEPQHEY-GVFELGANHLGEINYTSSLVQPDV------- 178

Query: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQN-AIINVDDAVGAQWVKQLPQAIGVS 280
            + +N++  HL+  G++E  A AK  +F   A    A+IN DDA      +       +S
Sbjct: 179 AMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVINADDAFADVMRRAAASHTQLS 238

Query: 281 LVTKPNTAQAIWAREVAYAESGITLNFESSWGEGE--LHAPLIGEFNACNLLLALATLLS 338
             ++ N A  + A E++ A++     F  ++ + +  +  PL G     N L A +  L+
Sbjct: 239 FSSQGNPAD-VSADELS-ADALGCYRFRIAYLDEQRTVSLPLSGRHQVSNALAATSICLA 296

Query: 339 LGFEKSALLATAPKLRPVLGRME 361
           LG     ++    +L+PV GRM+
Sbjct: 297 LGLSLDEIVQGLMRLQPVKGRMQ 319