Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  422 bits (1086), Expect = e-122
 Identities = 233/493 (47%), Positives = 299/493 (60%), Gaps = 13/493 (2%)

Query: 24  ISELIAPWLELTDPKLAALVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGAN 83
           + EL+APW     P         L LDSR I+ GD F+A+ GH VDGRQFIDKA+AQGA 
Sbjct: 3   LRELLAPWF----PYAGEQTFLDLTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGAT 58

Query: 84  LVLAEADAQHLNGWVEYRAGVPVIYLAELGQHLSELAGRLYG---GHHNQLIGVTGTNGK 140
            VL   D     G V        IY  EL +H+S +A   Y    GH   ++G+TGTNGK
Sbjct: 59  AVLVHTDNPQEQGKVIVAEQGVQIYFYELAKHVSAVAAVRYPVIQGHAMGIVGITGTNGK 118

Query: 141 TTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYT 200
           T+ +QL AQ + LL  KAAVMGT GNG    L  + NTT +A+ +   L + A +G    
Sbjct: 119 TSTSQLCAQLVTLLSGKAAVMGTLGNGLWGELVDSGNTTADAITLMRQLHEFANKGVNTC 178

Query: 201 ALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIIN 260
           A+E SSHGLVQGRV  + F   VF+NL+RDHLDYHG ME YAAAK  LF   + ++ ++N
Sbjct: 179 AMEVSSHGLVQGRVDAVPFDVAVFTNLTRDHLDYHGDMENYAAAKQMLFRFDSLRHGLLN 238

Query: 261 VDDAVGAQWV---KQLPQAI-GVSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGEL 316
           +DD +G  W+   K +P  I G S+  + + A A + + V + + G+        GE ++
Sbjct: 239 LDDPIGGAWLAELKNVPAKIWGFSI--EAHKAAAFYTKNVRFNDQGVQATLVWPEGEIDI 296

Query: 317 HAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYA 376
            +PL+G FN  NLL AL+ L   G +  AL A  P L PV GRME F       +VVDYA
Sbjct: 297 SSPLLGAFNLSNLLAALSALYLQGMDMRALAAKVPYLVPVAGRMERFTTADNITLVVDYA 356

Query: 377 HTPDALEKALRALRVHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSE 436
           HTPDA+E+AL ALR HCAG LW + GCGGDRD+GKRP+M   AEQFADR+++T DN RSE
Sbjct: 357 HTPDAIEQALNALRRHCAGVLWCVFGCGGDRDKGKRPLMGQAAEQFADRIMVTSDNARSE 416

Query: 437 SPQAIVADMVAGLTYPERAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETI 496
            P  I+ D++ GLT+PERA  E  R  A    +  A + D+ILLAGKGHE YQ  A    
Sbjct: 417 DPNQIITDIIQGLTHPERALTEVDRVAAIKQVVAQAKSGDVILLAGKGHETYQEAAGVRH 476

Query: 497 HYSDRETAQQLLE 509
            Y +R  A+QL E
Sbjct: 477 DYDERALARQLSE 489