Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.6 bits (179), Expect = 1e-17
 Identities = 92/372 (24%), Positives = 150/372 (40%), Gaps = 64/372 (17%)

Query: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101
           + +  L  DSR I     FVA++G   DG  F   AI  GA  +L E          E  
Sbjct: 22  VTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVER---------ELA 72

Query: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161
             +P + +A+  + +  +   +    +   + +TG+NGKT++ ++IA    +L  K  V+
Sbjct: 73  FDIPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIA---TILSAKHQVL 129

Query: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLA--------ERGAQYTALETSSHGLVQGR 213
            T GN              N + +  TL  L         E GA +      + GLV+  
Sbjct: 130 YTAGN------------FNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSGLVRPH 177

Query: 214 VKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDA------VG 266
           V        + +N+   HL+  G+    A AK  +++       AIIN DDA      V 
Sbjct: 178 V-------ALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVK 230

Query: 267 AQWVKQLPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW-------GEG-ELHA 318
           A+  KQL      S   +   A+    R++    +G   N +  +       GE  E+  
Sbjct: 231 AKHYKQL------SFSQQEGAAK----RQIDVIATGHKANSDGCYRFMLNYAGESCEVVL 280

Query: 319 PLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHT 378
           PL G     N L A +  ++LG   + +     +L PV GRM+  Q  +   +   Y   
Sbjct: 281 PLAGRHQVSNALAAASVCIALGLNLTEIAEGLSQLTPVKGRMQPTQLGRVRLIDDSYNAN 340

Query: 379 PDALEKALRALR 390
           P ++  A+  L+
Sbjct: 341 PVSVGAAIAWLK 352