Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.1 bits (170), Expect = 2e-16
 Identities = 69/245 (28%), Positives = 98/245 (40%), Gaps = 36/245 (14%)

Query: 118 ELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVMGTTGNGFLNALEPAAN 177
           EL  R        +IG+TG+NGKTT+T L+ + L   G   AV G  G   L        
Sbjct: 98  ELFAREIADRKPCVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGIPAL-------- 149

Query: 178 TTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVAGVFSNLSRDHLDYHGT 237
                        DL +  A    LE SS  L       L+ VA    N++ DH+D +  
Sbjct: 150 -------------DLLKENADIFVLELSSFQL--ETTHSLNCVASTCLNVTEDHMDRYSD 194

Query: 238 MEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIGVSLVTKPNTAQAIWAREVA 297
           M+AY  AK  L+  H  ++ I N DDA+          + G  L         I   ++ 
Sbjct: 195 MDAYRKAKLRLY--HQSRSIIFNRDDALTIPTEPMNQNSFG--LAPPEGDEWGICDSKIY 250

Query: 298 YAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLSLGFEKSALLATAPKLRPVL 357
           +  S I    E S         LIG  N  NLL A+A + ++G +K  +   A     + 
Sbjct: 251 HGHSEIMPITEVS---------LIGSHNHANLLAAMALVYAVGVDKQVMANVARTFTGLS 301

Query: 358 GRMEL 362
            R E+
Sbjct: 302 HRCEV 306