Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  267 bits (683), Expect = 6e-76
 Identities = 170/483 (35%), Positives = 253/483 (52%), Gaps = 44/483 (9%)

Query: 44  ITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYRAG 103
           IT + +DSRL+++G  F+A++G   DG  +I  AI +GA  +L E   +      E  AG
Sbjct: 23  ITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQKGATAILCEDIPE------EPVAG 76

Query: 104 VPVIYLAELGQHLSELAGRLYGGHHNQ--LIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161
           +  I + +    + ++A   YG   +Q  L+GVTGTNGKTTI  L+       G+K  ++
Sbjct: 77  ITYIQVKDSEDAVGKIATTFYGNPTSQFELVGVTGTNGKTTIATLLYNTFRYFGYKVGLI 136

Query: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLHFVA 221
            T  N   +   P  +TT + + +   L  +A+ G +Y  +E SSH + Q R+  L F  
Sbjct: 137 STVCNYIDDQPIPTEHTTPDPITLNRLLGQMADEGCKYVFMEVSSHSIAQKRISGLKFAG 196

Query: 222 GVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNA--IINVDDAVGAQWVKQLPQAIGV 279
           G+F+NL+RDHLDYH T+E Y  AK   F +   +NA  + N+DD  G             
Sbjct: 197 GIFTNLTRDHLDYHKTVENYLKAKKKFFDDMP-KNAFSLTNLDDKNG------------- 242

Query: 280 SLVTKPNTAQAIW-----------AREVAYAESGITLNFESSWGEGELHAPLIGEFNACN 328
            LV   NT   ++            R +     G+ L+F +     EL    IG+FNA N
Sbjct: 243 -LVMTQNTRSKVYTYSLRSLSDFKGRVIESHFEGMLLDFNNH----ELAVQFIGKFNASN 297

Query: 329 LLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEKALRA 388
           LL      + LG ++  +L     L PV GR +  +  +    +VDYAHTPDAL   L A
Sbjct: 298 LLAVFGAAVLLGKKEEDVLLALSTLHPVAGRFDAIRSPKGVTAIVDYAHTPDALVNVLNA 357

Query: 389 LR--VHCAGQLWAIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMV 446
           +   +   G++  +VG GG+RD+GKRP+MA  A + +DRVI+T DNPR E PQ I+ DM+
Sbjct: 358 IHGVLEGKGKVITVVGAGGNRDKGKRPIMAKEAAKASDRVIITSDNPRFEEPQEIINDML 417

Query: 447 AGLTYPE--RAHIEHHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETA 504
           AGL   +  +      R +A   A   A   D+IL+AGKGHE+YQ +     H+ D+E  
Sbjct: 418 AGLDAEDMKKTLSIADRKEAIRTACMLAEKGDVILVAGKGHENYQEIKGVKHHFDDKEVL 477

Query: 505 QQL 507
           +++
Sbjct: 478 KEI 480