Pairwise Alignments

Query, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (RefSeq) from Shewanella sp. ANA-3

 Score = 72.8 bits (177), Expect = 2e-17
 Identities = 89/366 (24%), Positives = 144/366 (39%), Gaps = 52/366 (14%)

Query: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101
           + I  L  DSR I     FVA++G   DG  F   AI  GA  +L E          +  
Sbjct: 22  VTIQALSSDSRKIGPATLFVALKGERFDGHDFAATAIENGAVALLVER---------QLA 72

Query: 102 AGVPVIYLAELGQHLSELAGRLYGGHHNQLIGVTGTNGKTTITQLIAQWLELLGHKAAVM 161
             VP + +A+  + +  +   +        + +TG+NGKT++ ++IA    +L  K  V+
Sbjct: 73  FDVPQLIVADCQKAMGAIGAYVRDQVDPICVALTGSNGKTSVKEMIA---TILSAKHQVL 129

Query: 162 GTTGNGFLNALEPAANTTGNALQIQATLRDLA--------ERGAQYTALETSSHGLVQGR 213
            T GN              N + +  TL  L         E GA +      +  LV+  
Sbjct: 130 YTAGN------------FNNEIGVPLTLLRLTSEDKYGVFELGANHKGEIDYTSSLVRPH 177

Query: 214 VKKLHFVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSE-HACQNAIINVDDAVGAQWVKQ 272
           V        + +N+   HL+  G+    A AK  +++       AIIN DDA       +
Sbjct: 178 V-------ALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQPGGTAIINADDAFADVMRVK 230

Query: 273 LPQAIGVSLVTKPNTAQAIWAREVAYAESGITLNFESSW-------GEG-ELHAPLIGEF 324
             Q   +S   +   A+    R++    +G   N E  +       GE  E+  PL G  
Sbjct: 231 AKQYKQLSFSQQEGAAK----RQIDVIATGHKANSEGCYRFILNYAGESCEVTLPLAGRH 286

Query: 325 NACNLLLALATLLSLGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEK 384
              N L A +  ++LG     +     +L PV GRM+  Q  +   +   Y   P ++  
Sbjct: 287 QVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQPTQLGRVRLIDDSYNANPVSVGA 346

Query: 385 ALRALR 390
           A+  L+
Sbjct: 347 AIAWLK 352