Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase from Pseudomonas stutzeri RCH2

 Score =  316 bits (810), Expect = 9e-91
 Identities = 194/457 (42%), Positives = 263/457 (57%), Gaps = 27/457 (5%)

Query: 6   LSQLSSVLNARLIGEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVAL 65
           LS+L   L+ RL+G D + +AVSTDSRAI    LF+AL G RFD H + +     GAVA 
Sbjct: 7   LSELQQPLSGRLVGADVSFAAVSTDSRAIEPGQLFIALTGPRFDGHAYLADVAAKGAVAA 66

Query: 66  LVERELDAEC-SQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASIL-S 123
           LVERE++     QLVVADT+ ALG LG+        P  AITGS GKT+VKEM+ASIL S
Sbjct: 67  LVEREIETSTLPQLVVADTRLALGLLGASNRNAFNGPVAAITGSSGKTSVKEMLASILRS 126

Query: 124 QKGQ--VLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALV 181
             GQ  VL T+GN NND+G PLTLL    E   AVIELGA+  G+IAYT  LV+PDV+L+
Sbjct: 127 AYGQNAVLATRGNLNNDLGAPLTLLELCDEHRAAVIELGASRPGDIAYTVKLVRPDVSLI 186

Query: 182 NNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVKTFSA 241
            N  +AH+  FG    +  AKGEI  GL    +A++N D      W   +A K + +F  
Sbjct: 187 TNAGSAHVGEFGGPHKIVEAKGEILDGLSESGIAVLNRDDKAYPIWAERVAGKRIVSFGL 246

Query: 242 TDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEMGASL 301
            +  ADF    +  +  G  SF L  P+G + ++L ++G+HNVANALAAAA +  +G   
Sbjct: 247 DNPLADFSAGSIAYDQRGCPSFVLTGPLGNLRIQLNLLGRHNVANALAAAAAAYALGVDA 306

Query: 302 AEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVRWLILGN 361
             +  GL  L  VKGR     L + + LIDDSYNA+  ++ AA+++L SF+    L+LG+
Sbjct: 307 DAVVAGLQQLQPVKGRAVAQMLANGVRLIDDSYNANPASICAAIDVLASFAGRTILVLGD 366

Query: 362 MAELGDESLALHQQVGEHA----------APFGFEFVLTYGKDAKVISDLCQGHHFATHQ 411
           M ELG+ +   H++VG +A           P     V  +G  A+         HFA   
Sbjct: 367 MGELGEWAEQGHREVGAYAVGKVDTLYAVGPLMAHAVQAFGPGAR---------HFA--- 414

Query: 412 DMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAAL 448
           D  + I+  +  +QG    +L+KG+ SA M K+  AL
Sbjct: 415 DQASLIDS-LRAEQGSGTTILIKGSRSAAMDKVVDAL 450