Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella amazonensis SB2B

 Score = 89.4 bits (220), Expect = 2e-22
 Identities = 95/396 (23%), Positives = 161/396 (40%), Gaps = 38/396 (9%)

Query: 23  AVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAE-------- 74
           +V A   DSR + A  LF+A+ G + D   +   A   GA A LV  +   E        
Sbjct: 19  SVHAPVIDSRQLTAGGLFIAVPGYKTDGRAYLDAAFAKGAAAALVHTDDPDEHGKVSYEP 78

Query: 75  --CSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQ 132
             C      + + +      +   + +   V +TG+ GKT+V +++A +    G      
Sbjct: 79  GLCIAFFQLNRQVSAVARQYYALTRGKLRVVGVTGTNGKTSVSQLIAQLTELLGDKAAVM 138

Query: 133 GNFNNDIGVPLTLLRSTTEDDYAVI--------------ELGANHVGEIAYTTALVKPDV 178
           G   N +   L  + +TT D   V+               +  +  G +      V  +V
Sbjct: 139 GTLGNGLWGQLQDVGNTTADAVRVMADLYDFEHQGAKVCAMEVSSHGLVQGRVEAVPFEV 198

Query: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVKT 238
           A+  N++  HL+  G MD    AK  ++    + +  ++NLD   G+ W   +   T   
Sbjct: 199 AVFTNLSRDHLDYHGDMDNYAAAKRRLF-AFGSLSARVINLDDKVGEQWFDGMGCAT--G 255

Query: 239 FSATDH-NADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEM 297
           FS   H  AD+   +   +  G  S  LV P G+  +E  ++G  N++N LAA     ++
Sbjct: 256 FSCLGHAKADWRFENAHFHHAGF-SANLVWPGGQKPLECRLLGAFNLSNLLAALCAMAQL 314

Query: 298 GASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDD---SYNASVPAMKAAVELLGSFSAV 354
           G  + ++    A L  V GR++    +D ++L+ D   + +A   A+KAA          
Sbjct: 315 GYQVPDLVAAAAKLEAVPGRMECFPRKDGVSLVVDYAHTPDAIEQALKAARH---HCEGA 371

Query: 355 RWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLT 390
            W++ G     GD        + E A  F    VLT
Sbjct: 372 LWIVFGCG---GDRDKGKRPLMAEAAEAFADCLVLT 404