Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  203 bits (517), Expect = 9e-57
 Identities = 146/436 (33%), Positives = 215/436 (49%), Gaps = 13/436 (2%)

Query: 25  SAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQ--LVVAD 82
           + V  DSRA+ A  LF+AL GER D H     A+T GA A LV R      +   LVV D
Sbjct: 37  TGVCIDSRAVVAGDLFIALAGERTDGHAHVEAALTAGASAALVSRIPAGIATDRLLVVED 96

Query: 83  TKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNNDIGVP 142
           T + L  L     A+     V +TGS GKT  KEM+   L + G+V  T+GN NN  G+P
Sbjct: 97  TLEGLWALARASRARFAGKLVGVTGSLGKTGTKEMLTQALGRFGRVHATEGNLNNHFGLP 156

Query: 143 LTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAK 202
           LTL R   + D AVIELG NH GE+     L +P VA++ NVAA HLE F S++ +  AK
Sbjct: 157 LTLARMPADTDLAVIELGMNHPGELGPLARLARPHVAIITNVAAVHLEFFDSVEAIADAK 216

Query: 203 GEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTV-KTFSATDH-NADFYPRDVRLNALGI 260
            EI +G++ G   ++N D+   +  +   A + + KT S  +H  AD    D  ++A G 
Sbjct: 217 AEILEGVEPGGTVVLNRDNRFFERLRRAAAARGIDKTLSFGNHIGADARVLDCAVDANGT 276

Query: 261 ASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEMGASLAEIGQGLAHL--SKVKGRV 318
           A F L+     +   + + G+H   N+L   A+   +G  +     GLA++   + +GR 
Sbjct: 277 AVFALIGD-DPLAYRMAVEGRHWALNSLGVLAVVRALGLDIHSAANGLANVVPPRGRGRR 335

Query: 319 DMAQLRDD--ITLIDDSYNASVPAMKAAVELLGSF----SAVRWLILGNMAELGDESLAL 372
               L  D  I +IDD+YNAS  ++ AA+  L          R  +LG+M ELG ++  L
Sbjct: 336 QSVSLGGDGAIQVIDDAYNASPESVIAALTTLSMTRPGPRGRRIAVLGDMLELGPQAAKL 395

Query: 373 HQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQGRTQVLL 432
           H  + + +   G + V T G     + D         H      +   +        V++
Sbjct: 396 HADLAKISVERGIDLVYTAGPLMAHLHDALPASRRGGHAPDADALTPLVLAALRPGDVVM 455

Query: 433 VKGANSAGMSKIAAAL 448
           VKG+  + +S+   AL
Sbjct: 456 VKGSKGSLVSRTVTAL 471