Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase MurF from Phaeobacter inhibens DSM 17395

 Score =  191 bits (484), Expect = 6e-53
 Identities = 150/449 (33%), Positives = 219/449 (48%), Gaps = 25/449 (5%)

Query: 21  DRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDA---ECSQ 77
           D  V  +S D+R+I A  LFVAL   R D HDF +QA+  GA A LV R  +    +   
Sbjct: 20  DWRVDGISIDTRSIAAGDLFVALKAAR-DGHDFVAQALEKGAGAALVSRRPEGVGDDAPL 78

Query: 78  LVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNN 137
           L+V D + AL  LG    A+     +A+TGS GKT+ KEM+A +LS +G+      ++NN
Sbjct: 79  LLVDDVQTALEALGRAGRARTDARVIAVTGSVGKTSTKEMLARMLSDQGRTHAAVASYNN 138

Query: 138 DIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDG 197
             GVPLTL R   + ++AVIE+G NH GEI+      +P VA+V  VA  HLE F  ++G
Sbjct: 139 HWGVPLTLARMPRDTEFAVIEIGMNHPGEISPLAKQARPHVAMVTTVAPVHLEAFDGIEG 198

Query: 198 VKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKT--VKTF-SATDHNADFYPRDVR 254
           +   K  I  GL+ G VA++N D       ++V    T  V+ F + T   A  Y     
Sbjct: 199 IAAEKAAIIDGLEPGGVAVLNADIAEAPILQSVAERVTHDVQWFGTGTGPIAPTY-HLTA 257

Query: 255 LNALGIASFTLVTPVGEVGVELGI--MGQHNVANALAAAALSLEMGASLAEIGQGLAHLS 312
               G  +  LVT        L I  +G H   NAL A A    +   LA+  Q L+  S
Sbjct: 258 TTLRGDETLALVTLPNAQTHRLHIQSLGAHFAMNALGALACLAALDLDLAKAVQSLSLWS 317

Query: 313 KVKGR-----VDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAV--RWLILGNMAEL 365
            V GR     V +   + +I L+DDSYNA+  ++ AA+ +L +      R   LG+M EL
Sbjct: 318 PVTGRGARETVSLGAGQGEILLLDDSYNANPTSVAAALAVLAATPCAGRRIAYLGDMKEL 377

Query: 366 GDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLC----QGHHFATHQDMMTFIEQHI 421
           G +   LH  + +  A    + +   G     +        +G H+AT  D    +   +
Sbjct: 378 GPQEQRLHSDLADLDAVQALDEIHCIGPLMGALHAALPAEKRGGHYATSDD----VRADL 433

Query: 422 EQQQGRTQVLLVKGANSAGMSKIAAALKE 450
             Q     V+L KG+ S  ++K+   ++E
Sbjct: 434 AGQIAAGDVVLAKGSLSMALAKVVDGIRE 462