Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE from Phaeobacter inhibens DSM 17395

 Score = 79.3 bits (194), Expect = 3e-19
 Identities = 104/407 (25%), Positives = 162/407 (39%), Gaps = 47/407 (11%)

Query: 6   LSQLSSVLNARLIGEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVAL 65
           LSQL   L AR  G D  +  ++ DSR +    LF AL G +     F   A+  GA A+
Sbjct: 9   LSQLG--LTARG-GVDPMIRGIAVDSRKVVEGGLFAALPGSQVHGAKFTPAALGNGAAAI 65

Query: 66  LVERELDAECSQL---------VVADTKQALGQLGS-WVHAQCQTPTVAITGSCGKTTVK 115
           L +       +QL         VV D +QAL    + W  AQ +T  VA+TG+ GKT+V 
Sbjct: 66  LTDAAGAQIVAQLLRESTVALVVVEDPRQALAYAAALWFGAQPET-MVAVTGTNGKTSVA 124

Query: 116 EMVASILSQKGQVLYTQGN----------FNNDIGVPLTLLRSTTEDDYAVIELGANHVG 165
             V  I  + G      G            N+    P+TL  +  +   A    G  H  
Sbjct: 125 SFVRQIWVELGHQAVNLGTTGVEGSWSHPLNHTTPEPVTLHDALAQAAAA----GVTHAA 180

Query: 166 EIAYTTALVKPDVALVNNVAAA-------HLEGFGSMDGVKRAKGEIYQG-LQAGAVAIV 217
             A +  L +  +  V+  AA        HL+   + +    AK  +++  L    VA++
Sbjct: 181 MEASSHGLEQRRLDGVHLAAAGFTNFTQDHLDYHETFEAYFTAKAGLFRRVLPDDGVAVI 240

Query: 218 NLDSNGGDYWKAVLADKTVKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELG 277
           N+D   G+  +AV A +  +  S      D      R +A G                L 
Sbjct: 241 NMDDPRGEQMRAVAAARGHEVISVGRGLGDLSLVGARYDASG-QDMRFTWHDKPYQARLN 299

Query: 278 IMGQHNVANALAAAALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNAS 337
           ++G     N L A  L +  G     +   L HL  V+GR+ +A  R++   +   Y  +
Sbjct: 300 LIGGFQAENILLACGLVIASGEDPQAVFDTLPHLQTVRGRMQLAATRENGATVFVDYAHT 359

Query: 338 VPAMKAAVELLGSFSAVRWLILGNMAEL----GDESLALHQQVGEHA 380
             A+  A++      A+R  +LG +  +    GD   A    +G+ A
Sbjct: 360 PDAVATAIK------ALRPHVLGRLVAIVGAGGDRDAAKRPLMGQAA 400