Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 485 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Pedobacter sp. GW460-11-11-14-LB5

 Score = 77.4 bits (189), Expect = 9e-19
 Identities = 88/346 (25%), Positives = 143/346 (41%), Gaps = 31/346 (8%)

Query: 9   LSSVLNARLIGE-DRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLV 67
           L  V    L+G+ DR ++A++ DSR +  + +F A+VG   D H F  Q +  GA  ++ 
Sbjct: 7   LYGVTIKELVGKTDREINALNFDSRKVGKDDVFFAIVGTLADGHQFIGQTIQQGAAVIIC 66

Query: 68  ER--EL-DAECSQLVVADTKQALGQLGS--WVHAQCQTPTVAITGSCGKTTVKEMVASI- 121
           E   E+ D   + + V +T  ALG +    + +       + ITG+ GKTT+  ++  + 
Sbjct: 67  ENLPEIQDFTITYIKVENTSVALGIIAGNYFGNPSADLKLIGITGTNGKTTIATILFKLF 126

Query: 122 --LSQKGQVLYTQGNFNNDIGVPLT-----------LLRSTTED--DYAVIELGANHVGE 166
             L  K  +L T  N+ ND  V  T           LLR   +   DY  +E+ ++ V +
Sbjct: 127 KDLGYKTGLLSTVENYINDTVVAATHTTPNPIALNQLLREMVDAGCDYCFMEVSSHAVSQ 186

Query: 167 IAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDY 226
                      V   +N+   HL+   + D   +AK   +  L   A A+ N+D   G  
Sbjct: 187 HRIEGLTFSGGV--FSNLTHDHLDFHKTFDSYLKAKKAFFDVLPKSAFALTNIDDKNGVV 244

Query: 227 WKAVLADKTVKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVAN 286
              +   K  K   A    ADF  + +     G     L   +    V   ++G  N  N
Sbjct: 245 --MLQNTKAHKKTYALKQLADFKAKIIENQFSG-----LHLDIDNEDVYFKLVGSFNAYN 297

Query: 287 ALAAAALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDD 332
            LA    ++ +     ++   L+ LS  +GR D     D I  I D
Sbjct: 298 LLAVYGTAILLEQDKLKVLTLLSRLSGAEGRFDYITSADKIIGIVD 343