Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., UDP-N-acetylmuramyl-tripeptide synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  110 bits (275), Expect = 1e-28
 Identities = 94/363 (25%), Positives = 172/363 (47%), Gaps = 27/363 (7%)

Query: 23  AVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQ----- 77
           ++S ++ DSR I   ++FVA+ G R D  D+   A++ GAVA L+  +  AE  +     
Sbjct: 18  SLSHLTLDSREIGQGSVFVAVPGHRVDGRDYVDTALSQGAVAALIHTDDPAEHGKVSQDN 77

Query: 78  ---LVVADTKQALGQLGS--WVHAQCQTPTVAITGSCGKTTVKEMVASI---LSQKGQVL 129
              +     ++ L  L S  +V  + +   + +TG+ GKT+V +++A +   L +   V+
Sbjct: 78  GLRIYFFQLQRQLSALASQLYVLGRDRIKLIGVTGTNGKTSVTQLIAQLSDGLGKPAAVM 137

Query: 130 YTQGN--------FNNDIGVPLTLLRSTTEDDY---AVIELGANHVGEIAYTTALVKPDV 178
            T GN          N    P+T++R   + D    AV  +  +  G +      V  DV
Sbjct: 138 GTLGNGLWGQLVDSGNTTADPITVMRQLEDFDRQGTAVCAMEVSSHGLVQGRVDAVPFDV 197

Query: 179 ALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVKT 238
           A+  N++  HL+  GSMD    AK  +++   + +  ++NLD   G  W      K +  
Sbjct: 198 AVFTNLSRDHLDYHGSMDAYGAAKQRLFR-FSSLSHGLINLDDPVGRQWIQDKRCKGLVG 256

Query: 239 FSAT-DHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEM 297
           FS      A  Y ++V+ ++ G+++ TLV P GE  ++  ++G  N++N +AA       
Sbjct: 257 FSIQGQEGAAIYTKEVKQHSQGVSA-TLVWPEGEAKIDSPLLGIFNLSNLVAALGALYLS 315

Query: 298 GASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVRWL 357
           G ++A++   ++ L  V GR++    ++ +TL+ D  +      +A   L G      W 
Sbjct: 316 GYAMAQLLTQVSSLKPVAGRMERFTTQEGVTLVVDYAHTPDAIEQALRALRGHCRGKLWC 375

Query: 358 ILG 360
           + G
Sbjct: 376 VFG 378