Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Dechlorosoma suillum PS

 Score =  266 bits (681), Expect = 8e-76
 Identities = 176/460 (38%), Positives = 248/460 (53%), Gaps = 24/460 (5%)

Query: 6   LSQLSSVLNARLIGEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVAL 65
           L +++   N    G +     VSTDSR++    LFVAL GERFD H++ +QA   GA A 
Sbjct: 4   LFEVARATNGTAYGSNVLFGGVSTDSRSVGRGELFVALRGERFDGHEYLAQAGERGACAA 63

Query: 66  LVE----RELDAECSQ--LVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVA 119
           +V      +L  + S   + VADT+ ALG L  +  A+   P +A+TGS GKT+ KEM+A
Sbjct: 64  VVAVDTVEQLQGKVSLPLVAVADTRLALGALAGYWRAKFSLPLIAVTGSNGKTSTKEMIA 123

Query: 120 SILSQKGQ---------VLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYT 170
           SIL  +           VL TQGNFNNDIG+PLTLL+  T     VIE+G NH GEI Y 
Sbjct: 124 SILQAQAVLDGYDPAMVVLATQGNFNNDIGLPLTLLKLRTTHRSGVIEMGMNHPGEIGYL 183

Query: 171 TALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAV 230
           T L +P VALV N   AHLEG G +  V   K  IY GL+ G VA+V+ D     YWK V
Sbjct: 184 TRLAQPTVALVTNAQRAHLEGMGDLQQVAEEKATIYAGLKPGGVALVSADDAFAAYWKGV 243

Query: 231 LADKTVKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAA 290
              + V TF   D  AD   + V+L+ L      L +P G   + L + G HN  NA+AA
Sbjct: 244 NERRRVVTF-GLDKPADVGGK-VQLHGLE-TRIDLTSPKGNAAIRLRVPGLHNARNAVAA 300

Query: 291 AALSLEMGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGS 350
           AA +L  G SLA +  GL     VKGR+   Q      ++DD+YNA+  +++A +++L +
Sbjct: 301 AAAALAGGISLAAVVGGLESFRGVKGRLQQRQAAAGAVILDDTYNANPDSVRAGIDVLAA 360

Query: 351 FSAVRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDL--CQGHHFA 408
               + L+LG+M E+G  S   H ++G +A   G + +   G+ A   +      GHH+ 
Sbjct: 361 TVGRKILVLGDMGEIGAMSGQYHDEIGGYAKSQGVDQLHCLGEAAAQAARNFGAGGHHYK 420

Query: 409 THQDMMTFIEQHIEQQQGRTQVLLVKGANSAGMSKIAAAL 448
             + ++  ++  +    G T V LVKG+    M ++  AL
Sbjct: 421 NLEALVQAVQAEL---TGDTTV-LVKGSRFMKMERVVDAL 456