Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  351 bits (900), Expect = e-101
 Identities = 211/459 (45%), Positives = 276/459 (60%), Gaps = 12/459 (2%)

Query: 1   MIRVMLSQLSSVLNARLIGEDRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTG 60
           MI + L  LS  L A  +G+D  V A+S+DSR I    LFVAL G+RFD HDFA+ A+  
Sbjct: 1   MIPISLKALSQHLGAHRVGDDVTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIEN 60

Query: 61  GAVALLVERELDAECSQLVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVAS 120
           GA+ALLVEREL  +  QL+VAD ++A+G +G++V  Q     VA+TGS GKT+VKEM+A+
Sbjct: 61  GAIALLVERELAFDIPQLIVADCQKAMGAIGAYVRDQVNPICVALTGSNGKTSVKEMIAT 120

Query: 121 ILSQKGQVLYTQGNFNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVAL 180
           ILS K QVLYT GNFNN+IGVPLTLLR T ED Y V ELGANH GEI YT+ LV+P VAL
Sbjct: 121 ILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSGLVRPHVAL 180

Query: 181 VNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVKTFS 240
           VNNV +AHLEGFGS  GV +AK EIY  LQ    AI+N D    D  +         +FS
Sbjct: 181 VNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKHYKQLSFS 240

Query: 241 ----ATDHNADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLE 296
               A     D      + N+ G   F L        V L + G+H V+NALAAA++ + 
Sbjct: 241 QQEGAAKRQIDVIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALAAASVCIA 300

Query: 297 MGASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVRW 356
           +G +L EI +GL+ L+ VKGR+   QL   + LIDDSYNA+  ++ AA+  L   S  R 
Sbjct: 301 LGLNLTEIAEGLSQLTPVKGRMQPTQL-GRVRLIDDSYNANPVSVGAAIAWLKEISENRC 359

Query: 357 LILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTF 416
           L+LG++ ELGD +  LH ++G+ A   G + +   G   +  S      H   H  + T 
Sbjct: 360 LVLGDLGELGDNAPLLHAELGQLARQQGIDALFCTGTLTQHTSHAFGAEH---HDSVATL 416

Query: 417 IE---QHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKF 452
           +E   +HI Q  G+  V LVKG+ SA M ++   L   F
Sbjct: 417 VEKLIKHINQLPGQVTV-LVKGSRSAAMERVVDGLTVAF 454