Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 62.4 bits (150), Expect = 3e-14
 Identities = 82/311 (26%), Positives = 134/311 (43%), Gaps = 48/311 (15%)

Query: 103 VAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNNDIGVP-LTLLRSTTEDDYAVIELGA 161
           + ITGS GKTTV  +V  +L + G  +   GN    IG+P L LL+     D  V+EL +
Sbjct: 112 IGITGSNGKTTVTTLVGEMLREAGIAVAVGGN----IGIPALDLLKENA--DIFVLELSS 165

Query: 162 NHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDS 221
             +     TT  +    +   NV   H++ +  MD  ++AK  +Y   ++    I N D 
Sbjct: 166 FQL----ETTHSLNCVASTCLNVTEDHMDRYSDMDAYRKAKLRLYHQSRS---IIFNRDD 218

Query: 222 NGGDYWKAVLADKTVKTFSATDHNADFYPRDVRLNALGIASFTLVTPVGEVG--VELGIM 279
                        T+ T     ++    P +   +  GI    +     E+    E+ ++
Sbjct: 219 -----------ALTIPTEPMNQNSFGLAPPEG--DEWGICDSKIYHGHSEIMPITEVSLI 265

Query: 280 GQHNVANALAAAALSLEMG------ASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDS 333
           G HN AN LAA AL   +G      A++A    GL+H  +V G      ++  +T ++DS
Sbjct: 266 GSHNHANLLAAMALVYAVGVDKQVMANVARTFTGLSHRCEVVG------VKGGVTYVNDS 319

Query: 334 YNASVPAMKAAVELLGSFSAVRWLILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGK 393
              +V A  AA++ L        LI G   +  D S  L + + +         ++T G+
Sbjct: 320 KATNVGATVAALDGLSDHLGDIILIAGGDGKGADFS-PLEEPLTK------VTHLITLGR 372

Query: 394 DAKVISDLCQG 404
           D   I+ L +G
Sbjct: 373 DGNKIAALKEG 383