Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  162 bits (410), Expect = 2e-44
 Identities = 138/455 (30%), Positives = 212/455 (46%), Gaps = 29/455 (6%)

Query: 21  DRAVSAVSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERE-LDAECSQ-- 77
           D   +AV +DSR +    LFV + GERFD HDFA+  V  GA  L+ ER+  + EC    
Sbjct: 23  DATFAAVRSDSRKVAPGDLFVCIRGERFDGHDFAADVVRQGARVLIAERDPFNGECPSAD 82

Query: 78  ---LVVADTKQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGN 134
              +VV D+ +ALG+L +    + +   V +TG+ GKTTVKE++A +L  +G       N
Sbjct: 83  VTIMVVDDSVKALGRLANLHRMRSKARVVGVTGTAGKTTVKELLAQVLGVRGDTARNPLN 142

Query: 135 FNNDIGVPLTLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGS 194
            NN IG+PL++L +T  + + V+E G +   ++    A+++PD+ LV NV   H+ G G 
Sbjct: 143 LNNQIGLPLSMLEATGNESFWVMEAGISQPQDMDELGAVLRPDIGLVLNVGQGHVAGLGD 202

Query: 195 MDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVKTFSATDHNADFYP---- 250
             GV   K  +   L  G   +V  D +     +A    + ++ FSA+     +      
Sbjct: 203 R-GVAYYKSRLLAHLAEGGTGLVCADYD-DLVREARSVCRRLQFFSASGRGVGYRAAYDG 260

Query: 251 --RDVRLNALGIASFTLVTPVGEVGVEL----GIMGQHNVANALAAAALSLEMGASLAEI 304
              D   +  G+     V   G V   +    G  G  NVA   AAA L    G S  EI
Sbjct: 261 PVADAAGSDGGVRGRYRVWLDGSVHEVVAPFRGAFGAENVAAVAAAAHL---CGLSGEEI 317

Query: 305 GQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVRWL--ILGNM 362
             GLA     + R   A +      IDD+YNA+  +    VE +   +A   L  +LG M
Sbjct: 318 AAGLAEAVLPRQRFACATV-GGFVCIDDTYNANPLSSARMVEAVTEMAAGGPLVFVLGEM 376

Query: 363 AELGDESLALHQQVGEHAAPFGFEFVLTYGKDAKVISDLCQ----GHHFATHQDMMTFIE 418
            ELG+E+   H+++G   A  G   V   G +A+ ++   +    G  F    D  +F++
Sbjct: 377 LELGEEAADAHERLGRQLATTGARAVFWKGGNAEAVAMGLRLGGYGGLFCAVDDTASFVD 436

Query: 419 QHIEQQQGRTQVLLVKGANSAGMSKIAAALKEKFA 453
           +          VL  KG+    +  + AA  + FA
Sbjct: 437 RFASLGLASAHVLF-KGSRGNRLEVLRAAFGDAFA 470