Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanyl ligase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  227 bits (578), Expect = 7e-64
 Identities = 155/429 (36%), Positives = 233/429 (54%), Gaps = 27/429 (6%)

Query: 27  VSTDSRAIPAEALFVALVGERFDAHDFASQAV-TGGAVALLVERELDAECSQ--LVVADT 83
           V+TDSR  P  +LF+AL GE F+ + FA +A+ TG A A++ E E   E  Q  ++V D 
Sbjct: 16  VTTDSRNCPEGSLFIALKGESFNGNAFAGKALETGCAYAVIDESEYAIEGDQRYILVDDC 75

Query: 84  KQALGQLGSWVHAQCQTPTVAITGSCGKTTVKEMVASILSQKGQVLYTQGNFNNDIGVPL 143
            Q L QL ++   Q  T  + ITG+ GKTT KE+++++LSQ   +LYT GN NN IGVP 
Sbjct: 76  LQTLQQLANYHRRQLGTRVIGITGTNGKTTTKELISAVLSQSHNILYTLGNLNNHIGVPS 135

Query: 144 TLLRSTTEDDYAVIELGANHVGEIAYTTALVKPDVALVNNVAAAHLEGFGSMDGVKRAKG 203
           TLLR   E D AVIE+GANH GEI + + + +PD  ++ NV  AHLEGFGS +GV + KG
Sbjct: 136 TLLRLKAEHDLAVIEMGANHPGEIKFLSEIAEPDCGIITNVGKAHLEGFGSFEGVIKTKG 195

Query: 204 EIYQGL--QAGAVAIVNLDSNGGDYWKAVLADKTVKTFSATDHNADFYPRDVRLNALGIA 261
           E+Y  L  + G+   ++ D+    Y   +     +  +   D   D Y   V     G +
Sbjct: 196 ELYDFLRKKEGSTVFIHHDN---AYLMNIAEGLNLIPYGTED---DLY---VNGRITGNS 246

Query: 262 SF-TLVTPVGEVG----VELGIMGQHNVANALAAAALSLEMGASLAEIGQGLAHLSKVKG 316
            + T     G+ G    V+  ++G++N  NALAA  +    G   A+I + LA  +    
Sbjct: 247 PYLTFEWKAGKDGKSYQVQTQLIGEYNFPNALAAITIGRFFGVEDAKINEALAGYTPQNN 306

Query: 317 RVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAV-RWLILGNMAELGDESLALHQQ 375
           R  + +  DD TLI D+YNA+  +M AA++   +     + LILG+M ELG ES A HQ+
Sbjct: 307 RSQLKK-TDDNTLIIDAYNANPTSMMAALQNFRNMEVPHKMLILGDMRELGAESAAEHQK 365

Query: 376 VGEHAAPFGFEFVLTYGKDAKVISDLCQGHHFATHQDMMTFIEQHIEQQQGRTQVLLVKG 435
           + ++     FE V   G            H F T+ ++   I++ +E  + +   +L+KG
Sbjct: 366 IADYLKECAFEKVWLVGDQFAAAE-----HSFQTYPNVQEVIKE-LEADKPKGYTILIKG 419

Query: 436 ANSAGMSKI 444
           +N   +S +
Sbjct: 420 SNGIKLSSV 428