Pairwise Alignments

Query, 453 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase (RefSeq) from Shewanella sp. ANA-3

 Score =  103 bits (256), Expect = 2e-26
 Identities = 118/449 (26%), Positives = 192/449 (42%), Gaps = 48/449 (10%)

Query: 27  VSTDSRAIPAEALFVALVGERFDAHDFASQAVTGGAVALLVERELDAECSQLVVADTKQA 86
           ++ DSRAI    +F+AL G + D   F  +A+  GA A+LV  +   E  +++  +    
Sbjct: 23  LTLDSRAIRRGDVFLALPGHKVDGRQFIDKALAQGATAVLVHTDKIDEQGKVIATEQGVQ 82

Query: 87  LG--QLGSWVHAQCQTP----------TVAITGSCGKTTVKEMVA---SILSQKGQVLYT 131
           +   QL   V A                V ITG+ GKT+  ++ A   ++L  K  V+ T
Sbjct: 83  IYFYQLARQVSAVAAVRYPVVQGQSMGIVGITGTNGKTSTSQLCAQLVTLLEGKAAVMGT 142

Query: 132 QGN--------FNNDIGVPLTLLRSTTEDDYAVIELGANHV---GEIAYTTALVKPDVAL 180
            GN          N     +TL+R   E     +   A  V   G +      V  DVA+
Sbjct: 143 LGNGLWGELVDSGNTTADAITLMRQLHEFADKGVNTCAMEVSSHGLVQGRVDAVPFDVAV 202

Query: 181 VNNVAAAHLEGFGSMDGVKRAKGEIYQGLQAGAVAIVNLDSNGGDYWKAVLADKTVKT-- 238
             N+   HL+  G M+    AK  +++   +    +VNLD   G  W + LA+   K   
Sbjct: 203 FTNLTRDHLDYHGDMENYAEAKQMLFR-FDSLLHGLVNLDDPVGAAWLSELANVPAKMWG 261

Query: 239 FSATDHN-ADFYPRDVRLNALGIASFTLVTPVGEVGVELGIMGQHNVANALAAAALSLEM 297
           FS   H    FY ++ + N  G+ + TLV P GEV +   ++G  N++N LAA +     
Sbjct: 262 FSIEAHTEVAFYTKNAQFNDQGVQA-TLVWPEGEVDIRSPLLGAFNLSNLLAALSALYLQ 320

Query: 298 GASLAEIGQGLAHLSKVKGRVDMAQLRDDITLIDDSYNASVPAMKAAVELLGSFSAVR-W 356
           G  +  +   + +L  V GR++     D+ITL+ D Y  +  A++ A+  L    A   W
Sbjct: 321 GMDMRALASKVPYLVPVAGRMERFTTADNITLVVD-YAHTPDAIEQALNALRRHCAGELW 379

Query: 357 LILGNMAELGDESLALHQQVGEHAAPFGFEFVLTYGKDAK------VISDLCQG----HH 406
            + G   +       L  Q  E  A    + ++    +A+      +I+D+ QG      
Sbjct: 380 CVFGCGGDRDKGKRPLMGQAAEQCA----DRIMVTSDNARSEDPNQIITDIIQGLTHPER 435

Query: 407 FATHQDMMTFIEQHIEQQQGRTQVLLVKG 435
             T  D +  I +H+  Q     V+L+ G
Sbjct: 436 ALTEVDRVAAI-KHVVAQAKPGDVILLAG 463